Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00563 ATGTTGACTCTCCTCTATTTATTCCTTTCCAATTTCCCCTTCCATTTCCACAAACAACTTCCTTCAAGGGAAATGGCTCTCCTTGGATTTCTTCTGGGACTTTTCTACATGGTGTCACATGTGAAGGGCTACGGGGGTTGGACCAATGCACACGCCACTTTCTACGGAGGAGGTGATGCTTCTGGGACAATGGGAGGGGCTTGTGGTTATGGAAATCTGTATAGCCAGGGTTATGGAACTGATACAACAGCACTCAGCACTGCACTGTTCAACAATGGTTTGAGCTGTGGTGCATGCTTTGAAATCAAATGTGTGAATGACCCACAATGGTGTCTTCCTGGCTCCATCGTTGTCACCGCCACAAATTTCTGTCCCCCCGGTGGTTGGTGTGACCCTCCCCAACACCACTTCGATCTCTCTCAACCTGTTTTCCAGCACATTGCTCAATATAGAGCCGGAATCGTTCCTGTAGTTTACAGAAGGGTGAGATGCAGGAGAAAGGGTGGAATCAGGTTCAGCATCAATGGCCACTCTTACTTCAATTTAGTGCTTGTGACGAATGTTGGAGGTGCTGGTGATGTGCATTCTGTGTACATCAAAGGGTCAAGAACTAGATGGCAAGCCATGTCAAGGAACTGGGGGCAAAACTGGCAAAGCAACTCCTATTTGAATGGGCAAAGTCTTTCCTTTGTAGTGACCACTGGCAATGGACACAGTGTGGTGTCATACAATGTTGCTCCAGCTGGTTGGTCCTTTGGGCAGACCTACACTGGGAGGCAGTTCAACTACTAA 792 0.4785 MLTLLYLFLSNFPFHFHKQLPSREMALLGFLLGLFYMVSHVKGYGGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTTALSTALFNNGLSCGACFEIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPQHHFDLSQPVFQHIAQYRAGIVPVVYRRVRCRRKGGIRFSINGHSYFNLVLVTNVGGAGDVHSVYIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSVVSYNVAPAGWSFGQTYTGRQFNY 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00563 263 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Viun5g00563 263 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Viun5g00563 263 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Viun5g00563 263 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Viun5g00563 263 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Viun5g00563 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Viun5g00563 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Viun5g00563 263 FunFam Expansin 37 165 - -
Viun5g00563 263 Pfam Lytic transglycolase 82 159 IPR009009 -
Viun5g00563 263 FunFam Expansin 169 261 - -
Viun5g00563 263 SUPERFAMILY Barwin-like endoglucanases 46 187 IPR036908 -
Viun5g00563 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Viun5g00563 263 Gene3D - 36 165 IPR036908 -
Viun5g00563 263 SMART dpbb_1 82 159 IPR007112 -
Viun5g00563 263 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Viun5g00563 263 PRINTS Expansin signature 104 115 IPR002963 GO:0009664
Viun5g00563 263 PRINTS Expansin signature 244 260 IPR002963 GO:0009664
Viun5g00563 263 PRINTS Expansin signature 77 91 IPR002963 GO:0009664
Viun5g00563 263 PRINTS Expansin signature 116 126 IPR002963 GO:0009664
Viun5g00563 263 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Viun5g00563 263 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Viun5g00563 263 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Viun5g00563 263 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Viun5g00563 263 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Viun5g00563 263 CDD DPBB_EXPA_N 46 154 - -
Viun5g00563 263 Gene3D - 169 261 IPR036749 -
Viun5g00563 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 169 IPR007112 -
Viun5g00563 263 PANTHER EXPANSIN-A15 33 261 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00563 Viun-Chr5 3288311 3290006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00563 24 261 Expansin Gene Family AT2G03090 77.016 3.72e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00563 K20628 - gmx:100791784 510.375