Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00556 ATGGGACGATCACCATGCTGTGACAAGGTGGGGCTGAAGAAAGGGCCATGGACGCCGGAGGAAGATCAGAAGCTCTTGGCGTATATTGAAGAACACGGCCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCTGGACTTGAGAGGTGTGGCAAGAGCTGCAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGTATGCAAGAAGAACAAACCATCATTCAACTCCATGCACTCTTAGGGAACAGGTGGTCGGCAATAGCAACACATTTGCCAAAGAGAACAGATAATGAGATAAAGAACTACTGGAACACGCATCTGAAGAAAAGGTTAGACAAAATGGGTATTGATCCGGTGACTCACAAGCCCAAGAACGATGCCATTCTCTCCACCACCGAAGGCCATTCCAAGAGTGCATCCAACCTAAGCCACATGGCTCAGTGGGAGAGTGCCAGACTCGAAGCAGAAGCAAGATTGGTCAGAGAATCAAAACTACGTACCTCACATTCATCATCACCCTCATTGCAGCATTCTCTAATTGGCACTTCTGCATCATCATCGTCTTCTTCGGCTCCACTGTTACCCTCCTCAACACCTTCTCTCGATCATGCTTGGAACAATGGTTGTAGTACTAGTACGGTTGCCACCAGGGTCAGTGACCTTGAGTCCCCCACTTCTACCTTATCTGAGAACAACGCGCCACCGATTATGACTAGTGTGATTGAGTTTGTTGGTTCTTCTGAGAGAGGGACGGTGAAGGAAGAAGGAGAGCGAGAATGGAACAAAGGTTTTCATGAATACAAAGATGGTGGTATGGAAAATTCCATGCCCTTCACGTCTAGTCTGCATGAGTTGACAGTGACCATGGCAACCACGTGGGGTTCCAGCACTACCAGTGCACATGCACATGCACATGGACATGTTTCTGAGGAGGGATTCACCAACCTTTTGCTCAATTCTAACTCCGATCACCGGAGCTTGTCGCCGGAGGGTGGTGCAGAGTCTAATAATAATTGTCATGGTAATGGTAGTGATGGTCATAACAACGGTAACCATAACGAGTTATACGAAGATAACAAGATCTATTGGAACAACATTCTTAATTTGATGAACTGTTCTTCCCCTTCGGATTCACCCATGTTCTGA 1161 0.4686 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLERCGKSCRLRWTNYLRPDIKRGKFSMQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLDKMGIDPVTHKPKNDAILSTTEGHSKSASNLSHMAQWESARLEAEARLVRESKLRTSHSSSPSLQHSLIGTSASSSSSSAPLLPSSTPSLDHAWNNGCSTSTVATRVSDLESPTSTLSENNAPPIMTSVIEFVGSSERGTVKEEGEREWNKGFHEYKDGGMENSMPFTSSLHELTVTMATTWGSSTTSAHAHAHGHVSEEGFTNLLLNSNSDHRSLSPEGGAESNNNCHGNGSDGHNNGNHNELYEDNKIYWNNILNLMNCSSPSDSPMF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00556 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun5g00556 386 FunFam MYB-related transcription factor 13 66 - -
Viun5g00556 386 CDD SANT 69 112 IPR001005 -
Viun5g00556 386 CDD SANT 16 61 IPR001005 -
Viun5g00556 386 Gene3D - 68 142 - -
Viun5g00556 386 SMART sant 13 63 IPR001005 -
Viun5g00556 386 SMART sant 66 114 IPR001005 -
Viun5g00556 386 MobiDBLite consensus disorder prediction 324 355 - -
Viun5g00556 386 FunFam Transcription factor MYB39 68 136 - -
Viun5g00556 386 MobiDBLite consensus disorder prediction 171 204 - -
Viun5g00556 386 MobiDBLite consensus disorder prediction 324 357 - -
Viun5g00556 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun5g00556 386 Gene3D - 13 66 - -
Viun5g00556 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 231 - -
Viun5g00556 386 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun5g00556 386 MobiDBLite consensus disorder prediction 169 204 - -
Viun5g00556 386 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun5g00556 386 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun5g00556 386 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun5g00556 386 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00556 Viun-Chr5 3236030 3238894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00556 1 386 MYB Transcription Factor Family AT3G01140 54.156 1.56e-114 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g00556 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00556 K09422 - gmx:100794047 587.8