Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00554 ATGGAAGGAAGATTATCAGGATTGAGGAAAGGAGCATGGAGTCAAACTGAAGATGAGCGTCTCAGAGAATGCGTGCAACTCTATGGGGAAGGAAAATGGCACCTTGTTCCTCAAAGATCAGGGTTGAACAGATGCAGGAAGAGTTGTAGGCTGAGATGGTTGAACTATTTGAAACCAAATATCAAGCGAGGTGATTTTAGTGAAGATGAGGTCGATTTGATCATCAGATTGCATAAGCTTTTGGGAAACAGGTGGTCTCTGATCGCAGGAAGAATTCCGGGAAGAACTTCGAACGATGTGAAGAATTACTGGAACACCAACATGCGCCGCAAAGTACAATCTCACAGCAAAGATGAGGAGAACAACAACAAGAACAACGTGAAAGAATCCGAAAGAAGTTGGAAACCCCACCACCAAGTGATAAAGCCTGTGCCTCGAGCTTTGCCAAAAGCATCGCCCTTGGTGCAAAGGCAATTCATGAGTTGTTCGAAAGTTGGAGTTAGTGAAGCTGTTTCAGCAGCCTCTGAGAATTGGTGGGAAACTCTGTTAGATGAGAATGAAGATAACATTGCAGTTAACGACGACACGTGCTTCCCACGTGCAAAAGATGGATCCTTTGAACTTTGGAATGAAGAACTTGGTTCCATTGCTTCTGAGTTTCTTGCAGAAGGTGAAACATGGAAGGATTTTCTTCTTAATTAA 702 0.4345 MEGRLSGLRKGAWSQTEDERLRECVQLYGEGKWHLVPQRSGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLIIRLHKLLGNRWSLIAGRIPGRTSNDVKNYWNTNMRRKVQSHSKDEENNNKNNVKESERSWKPHHQVIKPVPRALPKASPLVQRQFMSCSKVGVSEAVSAASENWWETLLDENEDNIAVNDDTCFPRAKDGSFELWNEELGSIASEFLAEGETWKDFLLN 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00554 233 SUPERFAMILY Homeodomain-like 7 104 IPR009057 -
Viun5g00554 233 CDD SANT 12 57 IPR001005 -
Viun5g00554 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
Viun5g00554 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Viun5g00554 233 Gene3D - 65 138 - -
Viun5g00554 233 FunFam Myb transcription factor 10 62 - -
Viun5g00554 233 CDD SANT 66 108 IPR001005 -
Viun5g00554 233 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Viun5g00554 233 SMART sant 9 59 IPR001005 -
Viun5g00554 233 SMART sant 62 110 IPR001005 -
Viun5g00554 233 MobiDBLite consensus disorder prediction 111 138 - -
Viun5g00554 233 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Viun5g00554 233 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Viun5g00554 233 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 136 - -
Viun5g00554 233 Gene3D - 10 62 - -
Viun5g00554 233 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Viun5g00554 233 MobiDBLite consensus disorder prediction 110 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00554 Viun-Chr5 3206705 3207866 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00554 7 148 MYB Transcription Factor Family AT1G66370 61.972 7.80e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g00554 Myb_DNA-binding 7.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00554 - K16166 pvu:PHAVU_008G038600g 377.867