Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00553 ATGGAAGGAAGATTATCAGGTGTGAGGAAAGGAGCATGGAGTCAAACTGAAGATGAACTTCTCAGAGAATGCGTGCAACTCTATGGGGAAGGAAAATGGCACCTTGTTCCTCAAAGAGCAGGGTTGAACAGATGCAGGAAGAGTTGTAGGCTGAGATGGTTGAACTATTTGAAACCAAATATCAAGCGAGGTGATTTTAGTGAAGATGAGGTCGATTTGATCATCAGATTGCATAAGCTTCTGGGGAACAGGTGGTCTCTGATCGCAGGAAGACTTCCGGGAAGAACTTCGAACGATGTGAAGAATTACTGGAACACCAACATGCGCCGCAAAGTACAATCTCACAGCAAAGATGAGGAGAACAACGACAACGTGAAAGAATCCGAAAGAAGTTGGAAACCCCACCAAGTGATAAAACCTGTGCCTCGAGCTTTACCAAAAGCATCACCCTTGGTGCAAAGCCAATTCATGAGTTGTTCGAAAGTTGGTGTTAGTGAAGCTGTTTCAGCAGCCTCTGAGAATTGGTGGGAAACTCTGTTAGATGAGAATGAAGATAAAATTGCAGTTAACGACAGCACGTGCTTCCCACGTGCAAAAGATGGATCCTTTGAACTTTGGAATGAAGAACTTGGTTCCATTGCTTCTGAGTTTCTTGCAGAAGGTGAAACATGGAGCGATTTTCTTCTTAATTAA 693 0.4358 MEGRLSGVRKGAWSQTEDELLRECVQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLIIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTNMRRKVQSHSKDEENNDNVKESERSWKPHQVIKPVPRALPKASPLVQSQFMSCSKVGVSEAVSAASENWWETLLDENEDKIAVNDSTCFPRAKDGSFELWNEELGSIASEFLAEGETWSDFLLN 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00553 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Viun5g00553 230 CDD SANT 12 57 IPR001005 -
Viun5g00553 230 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Viun5g00553 230 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Viun5g00553 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 57 IPR017930 -
Viun5g00553 230 MobiDBLite consensus disorder prediction 109 132 - -
Viun5g00553 230 SUPERFAMILY Homeodomain-like 7 104 IPR009057 -
Viun5g00553 230 CDD SANT 66 108 IPR001005 -
Viun5g00553 230 FunFam Myb transcription factor 10 62 - -
Viun5g00553 230 FunFam Transcription factor MYB113 65 137 - -
Viun5g00553 230 MobiDBLite consensus disorder prediction 111 132 - -
Viun5g00553 230 SMART sant 9 59 IPR001005 -
Viun5g00553 230 SMART sant 62 110 IPR001005 -
Viun5g00553 230 Gene3D - 65 136 - -
Viun5g00553 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 133 - -
Viun5g00553 230 Gene3D - 10 62 - -
Viun5g00553 230 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Viun5g00553 230 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00553 Viun-Chr5 3183282 3184259 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00553 7 171 MYB Transcription Factor Family AT1G66370 56.287 3.79e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g00553 Myb_DNA-binding 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00553 - K16166 pvu:PHAVU_008G038600g 390.963