Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00551 ATGGAAGCCATGGAAGAATTTTCAGGTGTGAGAAAAGGAGCATGGAGTAAATTTGAAGATGAACTTCTCAAAGCATGTGTTCATCTTTACGGGGAAGGACAATGGCACCTTGTTCCTCAGAGAGCAGGGTTGAAGAGATGCAGGAAGAGTTGTAGATTGAGATGGCTGAATTATTTGAAACCAAATATCAAGCGAGGAGATTTTAGTGAAGACGAGGTTGATTTGATGATCAAATTGCATAAACTTTTGGGAAACAGGTGGTCCCTGATTGCAGGAAGACTTCCAGGAAGAACATCAAACGATGTGAAGAATTACTGGATCACCTACACACGACGTAAATCACATTCTCAAAACAAACATAACAACGTAAAACAGCAGGATGAGACAGAATCATCACTGAAACCCCATGATGTTGTAAAGCCTGTGCCTCTAGCTTTACCAAAAACTTGCCCTAAGTTACTGCAAGAGAAATTTATAGATAGCTCCAAAGTTGGTGTTACTGAAGAAGGTGCAACTTCTTTATCAGGGTCGGAGAATTGGTTTGAAACTCTGTTAGATGAGAAGGGAAACAATATTACACTTAACAACAAGACATGCTTCTTTACAGAAAAAGATGGAGTGTTTGAAAAATGGGATGAAGAGCTTAGTTCAATTGCTTCTCACTTTTTTACAGAAACTGAAACTTGGACCGATATGTTTATTGACCTGGGAATTAATTAG 720 0.3889 MEAMEEFSGVRKGAWSKFEDELLKACVHLYGEGQWHLVPQRAGLKRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLMIKLHKLLGNRWSLIAGRLPGRTSNDVKNYWITYTRRKSHSQNKHNNVKQQDETESSLKPHDVVKPVPLALPKTCPKLLQEKFIDSSKVGVTEEGATSLSGSENWFETLLDEKGNNITLNNKTCFFTEKDGVFEKWDEELSSIASHFFTETETWTDMFIDLGIN 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00551 239 Gene3D - 12 64 - -
Viun5g00551 239 Pfam Myb-like DNA-binding domain 65 109 IPR001005 -
Viun5g00551 239 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Viun5g00551 239 SMART sant 64 112 IPR001005 -
Viun5g00551 239 SMART sant 11 61 IPR001005 -
Viun5g00551 239 FunFam Transcription factor MYB113 67 138 - -
Viun5g00551 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 59 IPR017930 -
Viun5g00551 239 FunFam Myb transcription factor 12 64 - -
Viun5g00551 239 CDD SANT 68 109 IPR001005 -
Viun5g00551 239 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Viun5g00551 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Viun5g00551 239 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Viun5g00551 239 CDD SANT 14 59 IPR001005 -
Viun5g00551 239 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 132 - -
Viun5g00551 239 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Viun5g00551 239 Gene3D - 66 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00551 Viun-Chr5 3160258 3161651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00551 5 143 MYB Transcription Factor Family AT1G66370 59.859 4.62e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g00551 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00551 - K09422 gmx:100780023 343.199