Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00550 ATGGAAGGATCATCGGGTGTGAGGAAAGGAGCATGGAGTAGATTTGAAGATGAACTTCTGAAAGCATGCGTTCGTCTCTACGGAGAAGGAAAATGGCACCTTGTTCCTCAAAGAGCAGGGTTGAAAAGATGTCGGAAGAGTTGTAGATTGAGATGGCTCAATTATCTGAAACCAAATATCAAGAGAGGGAATTTCAGTGAAGATGAGGTTGATTTGATCGTCAGATTGCATAAACTTTTGGGGAATAGGTGGTCCCTGATTGCAGGAAGACTTCCAGGACGAACTTCGAACGATGTGAAGAATTACTGGAACACCTACACACGACGTAAATCACACTCTCACAACAAAGATAACAACGTAAAACAGCATGATGAGACGACCGTAGGTAAAACATCTACGTACGACGTAAATTACAAACCCCACCAAGTTATAAAGCCTGTTCCTCGACCTTTGTCAAAAACTTGCCCCAAGTTATTGCAAGCCAAAATTATCCATAGCTCCAAAGTTGGTGTTAGTGAAGAAGGTGCAACTTCTTCGTCAAGCTCTGGGAATTGGTGGGAAACATTTTTAGACGAGAATGAAGACAATTTTGGAGCATTTGAGTTTTGGGGCGAAGAGTTTGGTTCAATTGCTTGTGACTTTCTTAATTAA 651 0.4163 MEGSSGVRKGAWSRFEDELLKACVRLYGEGKWHLVPQRAGLKRCRKSCRLRWLNYLKPNIKRGNFSEDEVDLIVRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTYTRRKSHSHNKDNNVKQHDETTVGKTSTYDVNYKPHQVIKPVPRPLSKTCPKLLQAKIIHSSKVGVSEEGATSSSSSGNWWETFLDENEDNFGAFEFWGEEFGSIACDFLN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00550 216 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Viun5g00550 216 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Viun5g00550 216 Gene3D - 9 61 - -
Viun5g00550 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Viun5g00550 216 SMART sant 8 58 IPR001005 -
Viun5g00550 216 SMART sant 61 109 IPR001005 -
Viun5g00550 216 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Viun5g00550 216 FunFam Transcription factor MYB113 64 134 - -
Viun5g00550 216 FunFam Myb transcription factor 9 61 - -
Viun5g00550 216 CDD SANT 11 56 IPR001005 -
Viun5g00550 216 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Viun5g00550 216 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Viun5g00550 216 Gene3D - 63 135 - -
Viun5g00550 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Viun5g00550 216 CDD SANT 64 106 IPR001005 -
Viun5g00550 216 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00550 Viun-Chr5 3153527 3156942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00550 2 152 MYB Transcription Factor Family AT1G66370 57.862 5.57e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g00550 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00550 - K16166 gmx:100780023 308.145