Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00549 ATGTGTGCAAGCACTTGTGTGATCATGGAAGGAAGATTATCAGGTTTGAGGAAAGGAGCATGGAGTCAAACTGAAGATGAGCTTCTCAGAGAATGCATGCAACTCTATGGGGAAGGAAAATGGCACCTTGTTCCTCAAAGAGCAGGGTTGAACAGATGCAGGAAGAGTTGTAGGCTGAGATGGTTGAACTATTTGAAACCAAATATCAAGCGAGGTGATTTTAGTGAAGATGAGGTCGATTTGATCATCAGATTGCATAAGCTTCTGGGGAACAGGTGGTCTCTGATCGCAGGAAGACTTCCGGGAAGAACTTCGAACGATGTGAAGAATTACTGGAACACCAACATGCGCCGCAAAGTACAATCTCACAGCAAAGATGAGGAGAACAACAACAAGAACAACGTGAAAGAATCCGAAAGAAGTTGGAAACCCCACCACCAAGTGATAAAGCCTGTGCCTCGAGCTTTGCCAAAAGCATCACCCTTGGTGCAAAGGCAATTCATGAGTTGTTCGAAAGTTGGAGTTAGTGAAGCTGTTTCAGCAGGCTCTGAGAATTGGTGGGAAACTCTGTTAGATGAGAAGGAAGATAACATTGCAGTTAACGACAGCACGTGCTTCCCACGTGCAAAAGATGGATCCTTTGAACTTTGGAATGAAGAACTTGGTTCCATTGCTTCTGAGTTTCTTGAAGAAGGTGAAACATGGAGCGATTTTCTTCTTAATTAA 726 0.438 MCASTCVIMEGRLSGLRKGAWSQTEDELLRECMQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLIIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTNMRRKVQSHSKDEENNNKNNVKESERSWKPHHQVIKPVPRALPKASPLVQRQFMSCSKVGVSEAVSAGSENWWETLLDEKEDNIAVNDSTCFPRAKDGSFELWNEELGSIASEFLEEGETWSDFLLN 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00549 241 MobiDBLite consensus disorder prediction 119 146 - -
Viun5g00549 241 CDD SANT 20 65 IPR001005 -
Viun5g00549 241 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Viun5g00549 241 FunFam Transcription factor MYB113 73 147 - -
Viun5g00549 241 CDD SANT 74 116 IPR001005 -
Viun5g00549 241 Gene3D - 73 146 - -
Viun5g00549 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Viun5g00549 241 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Viun5g00549 241 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Viun5g00549 241 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Viun5g00549 241 MobiDBLite consensus disorder prediction 118 150 - -
Viun5g00549 241 FunFam Myb transcription factor 18 70 - -
Viun5g00549 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Viun5g00549 241 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 14 142 - -
Viun5g00549 241 SMART sant 70 118 IPR001005 -
Viun5g00549 241 SMART sant 17 67 IPR001005 -
Viun5g00549 241 Gene3D - 18 70 - -
Viun5g00549 241 SUPERFAMILY Homeodomain-like 15 112 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00549 Viun-Chr5 3141874 3143247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00549 15 192 MYB Transcription Factor Family AT1G66370 50.732 2.18e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g00549 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00549 - K16166 pvu:PHAVU_008G038600g 384.8