Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00541 ATGGCAGCGTGCATAATCACGGTTTCCCAGGACGGAACCGCTGATTTCCTAACGGTACAGGAGGCGATCGACGCCGTGCCGCTTGGAAACATTCGCCGGACGGTGATTCGGGTATCGCCGGGAATCTACCGGCAGCCAGTATACATCCCCAAGACCAAGAATTTCATCACTCTCGCTGCTCTGTCCCCTGAGGACACTGTGCTTACCTGGAACAACACTGTCGCCGGAATCAATCACCATCAACCTGCGAGGATAATAGGGACTGGGACCTTCGGTTGTGGAAGTACCATTGTGGAAGGGGAGGACTTTATTGCTGAGAATATTACTTTTGAGAATTCTGCCCCTCAGGGTTCAGGTCAAGCAGTTGCAATTAGAGTAACAGCAGATCGATGTGCCTTCTACAATTGTAGGTTCCTTGGATGGCAGGACACATTGTACTTACATTACGGTAAACAATATTTGAAAGATTGTTACATTGAAGGAAGTGTGGACTTCATCTTTGGCAATAGCACTGCACTTTTGGAACATTGTCATGTCCACTGCAAGTCTGAGGGCTTCATAACTGCACAGAGCAGAAAATCATCACAGGAAACAACTGGTTATGTATTCTTAAGATGCACTATCACAGGTAATGGAGGAAAATCATATGCATATCTTGGACGACCGTGGGGCCCTTTTGGAAGGGTGGTCTTTGCATACACTTACATGGATCAGTGTATAAGACATGTTGGCTGGGATAACTGGGGGAACATGGAGCACGAGAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCCGGTTGCTGTCCATCGAAGCGAGTAACATGGTGTAGAGAATTGTTGGATGAAGAAGCTATGCAGTTCGTCACACATCCTTTCATTGATCCAGAACCAGAGAAACCTTGGCTTGCTCAAAGGATGGCCCTCAGAATTCCATATTCTGCTTGA 951 0.469 MAACIITVSQDGTADFLTVQEAIDAVPLGNIRRTVIRVSPGIYRQPVYIPKTKNFITLAALSPEDTVLTWNNTVAGINHHQPARIIGTGTFGCGSTIVEGEDFIAENITFENSAPQGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSEGFITAQSRKSSQETTGYVFLRCTITGNGGKSYAYLGRPWGPFGRVVFAYTYMDQCIRHVGWDNWGNMEHERSACFYEYRCFGPGCCPSKRVTWCRELLDEEAMQFVTHPFIDPEPEKPWLAQRMALRIPYSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00541 316 Gene3D - 3 310 IPR012334 -
Viun5g00541 316 SUPERFAMILY Pectin lyase-like 2 298 IPR011050 -
Viun5g00541 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 298 - -
Viun5g00541 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Viun5g00541 316 Pfam Pectinesterase 6 296 IPR000070 GO:0030599|GO:0042545
Viun5g00541 316 FunFam Pectinesterase 2 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00541 Viun-Chr5 3109197 3112769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00541 5 309 Carbohydrate Esterase AT5G47500 37.975 2.31e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00541 K01051 - gmx:100786786 642.884