Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00537 ATGGCAAGGAAGAGAAAGGTTTCTGAAGAAGTTGAAGAGAGAAATCCATCTGATGAAACCATGGCATGGGATGAGGTGATAAAGGAAGCTGCTGCACTAGGAAGTGGCAGAAGATTGAGGAAGAGATTTGTTGGGGTGAGACAAAGGCCTTCAGGAAGATGGGTGGCTGAAATAAAGGATACAATTCAGAAGATAAGAGTGTGGTTAGGAACCTTTGATACAGCTGAGGAAGCTGCAAGAGCCTATGATGAAGCTGCATGTCTTCTTCGAGGTGCCAACACCAGAACAAACTTCTGGCCTAATTCTCAATCTTCCTCAACTCCTGTTCTTCCCTCAAAGATTACCAATCTCCTCCTTCAAAGGCTCAAAGCAAGGAACAACACTAGAACAAAGCCTTGCACTGTTTCTTCAACCAACCAGCAACAAAACCAACAAGAAGATGTACGTGGAACTGAGTCAACATGTTTCACATTGGACCAATTCTCAGATTTGCTTAATGACTCTGAAGATTACAGCACGAACAACAATGAGTTTGGCAATGACAGTGCACAAATTGATTGCATCACAAGTAGCCTTGAATCGTGTTTGAATGAGAATGATGATTGCAGGGAAAAGGAAAAAGAAACGGAAATGGAATTTGACTTCAACAGTGTGACACAGACATCAAGTGCTGATGTAAATTCAGGAGAGGAAAGAGAGGAAGACAGTGAAGAAGGAAGTGATTTGAGTGTTCAGGATTTTCAGTTCCTGGACAATGTTGTTCCATCCAGTTATCAATATTCAGTATTTGAGGTCACTGAAGAGATTGAGGAGCAGTTGGAGGCTGAGAACTGTGGTGATGAGCCTTCAATGTTTAGAGATGTCATGAAGAGAATGAAATATGAGAGGAAGTTTTCAGCTTCCCTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAAGTTGAATCAGGAAACAAAGATAGAAGTGGGGTTTGTATTTCTAATGAACTAACCAACCTCAAGATGGCTTGCAGCAAAAACAAAATTGAGGGTATTGAGAAGAATGAAGAACAAATAGAAGCAATGGATAGGAAAGAACCACAAATATCCAGTATTGATGATGAACTGTTACTATGGAATTCACTTGATCTTCCTGTTATTTGTTGTGTTAACTAG 1161 0.4048 MARKRKVSEEVEERNPSDETMAWDEVIKEAAALGSGRRLRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPNSQSSSTPVLPSKITNLLLQRLKARNNTRTKPCTVSSTNQQQNQQEDVRGTESTCFTLDQFSDLLNDSEDYSTNNNEFGNDSAQIDCITSSLESCLNENDDCREKEKETEMEFDFNSVTQTSSADVNSGEEREEDSEEGSDLSVQDFQFLDNVVPSSYQYSVFEVTEEIEEQLEAENCGDEPSMFRDVMKRMKYERKFSASLYAFNGIPECLKLKVESGNKDRSGVCISNELTNLKMACSKNKIEGIEKNEEQIEAMDRKEPQISSIDDELLLWNSLDLPVICCVN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00537 386 MobiDBLite consensus disorder prediction 129 151 - -
Viun5g00537 386 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Viun5g00537 386 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Viun5g00537 386 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Viun5g00537 386 MobiDBLite consensus disorder prediction 215 242 - -
Viun5g00537 386 Coils Coil 192 212 - -
Viun5g00537 386 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Viun5g00537 386 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 299 - -
Viun5g00537 386 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Viun5g00537 386 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Viun5g00537 386 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Viun5g00537 386 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Viun5g00537 386 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00537 Viun-Chr5 3094832 3096013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00537 40 118 AP2-EREBP Transcription Factor Family AT5G19790 71.951 2.93e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun5g00537 AP2 7.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00537 K09286 - gmx:100796159 564.688