Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00525 ATGGGTTGCGCGAGCTCGAGGCAAGCTCTTGCGGGAGTCGATTTCACTCCGCCGGGACTGCTATCGTTGCAATCGAGCTCGCGGAAAAGGTGCAATGGGAAGAGGCGAAACGGCGTCGTGGAGGCGCGTGAGTTGGACGCGGGATTGGAGGAGGAGGAGAAGGAGTGGAAGAAGGGGAGCTTGAGAGGTCCGGTGTCGTTGAGGTTTGTGGAGGCTGAGCAGAATGCCGCTGGGTGGCCACAATGGCTTACCTCTGTTGCAGCGGAAGCCATTCAAGGGTGGGTCCCTCTCAAAACCGATTCTTTCGAGAGATTGGATAAGATTGGACAAGGTACATATAGCAATGTATTCCAAGCACGTGAAATTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTACGATTTGACAAACTTAAAGCTGATAGCATTAGGTTCATGGCGAGAGAAATAGTGATTCTTCGCTCACTTGACCACCCAAACATCATGAAATTGGATGGTATAATTACTTCACAACAATCAAACAGCATATACCTTGTATTTGAATACATGGAGCATGACCTTGCTGGCCTAGTGGCTTCTCCTGATATAAAGTTCACTGAAGCACAGATTAAGTGTTACATGAGACAGTTATTAAGTGGAATGGAGCATTGTCACCATCGAGGTATTATGCATCGAGACATTAAAGTATCTAATATACTAGTGAACAATGAAGGTGTTCTCAAGATAGCAGATTTTGGATTAGCAAATACCCTTAGTCCTAGTAGCAAGCAACCCTTAACAAGTCGAGTGGTGACTCTATGGTATCGTCCTCCTGAACTCTTAATGGGAGCAACAAATTATGGAGTTTCGGTGGATATATGGAGTGTTGGCTGTGTATTTTCTGAATTTTTTCTGGGGAAGCCCATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTCAAGCTTTGTGGGTCTCCACCTGAGGAATACTGGAAAAAGAGTAAGCTTCCTCTGGCCACAATGTTTAAGCCTCAGACTAATTACGAAGCCTCTCTTCAAGAGAGGTGTAAAGGTGTTCCTGTAACTGCTGTAAAACTACTCGAGACTTTACTTTCCATTGATCCTTCCAAGCGTGGGACCGCCTCCTCTGCACTCAAGTCTGAGTATTTCAGCACCAAGCCATATGCCTGTGATCCATCAGTCATGCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAGAAATCGGGAAGAAGCTAGCAGGAAAAAGATGCTAGGTAAAGGGAGAGAGACTGTAACATCAAAAAGGAATAATAGACGAGTCCAAAAAGTTTCCAATGACCATATAAATTTCATCAAACCAGCTTGGAAAGAGGAAATGCAGAACAGTTCTCAAAATGTTTGCACAGGTGATGATGGTAGGGCACATGTTGCAAAAGTTAAAATAGGAGCTTTGCATAAAGAGCAACCAAAGCTTTCATGTGATGCAAAGTTTGAGGCTGCCCAAGTGGTGAATGGTTGCAATGGAAACAGTGTGTACTCTGGACCGGCACATGTCTCAGCATCCAGTGGCTTTACATGGGCTAAAAGGAGAAAACCAGAAGCTTCATCCATATTGTCTGATGGTTCAAGAAGCAAAATCAGTGCTCTGGATCCAATCTTTGTAAAAGGCACATATGATTTAACAAAACAAGGGATAGAAGTTTCAGAAAGGAAACATGGTCTCAACACAAGACATCAGGACAGGACTTTAACCCATGTATTACCAATATACCAGGCTCCTCGCTTTCATCAAAAATCATTCGATTTAGCTGATAAATACAACTCAAATTATTTCATGGAATTTGATTTCACAGATAAATTGGATGCTCTGATAGTAGATCAGGGCCAGAGAAAATATGGTGAGCCTGTGAAGCTATCAGCACCAAAAATTATTTCATCAGATAAAAAGGATGAGTTGTTGCAGCGGAATGAAAATAATATGCGTCATTCTCTTCGTATGTCAACATCGGGAAGAGACCAATGA 2013 0.4322 MGCASSRQALAGVDFTPPGLLSLQSSSRKRCNGKRRNGVVEARELDAGLEEEEKEWKKGSLRGPVSLRFVEAEQNAAGWPQWLTSVAAEAIQGWVPLKTDSFERLDKIGQGTYSNVFQAREIETGRMVALKKVRFDKLKADSIRFMAREIVILRSLDHPNIMKLDGIITSQQSNSIYLVFEYMEHDLAGLVASPDIKFTEAQIKCYMRQLLSGMEHCHHRGIMHRDIKVSNILVNNEGVLKIADFGLANTLSPSSKQPLTSRVVTLWYRPPELLMGATNYGVSVDIWSVGCVFSEFFLGKPILKGRTEVEQLHKIFKLCGSPPEEYWKKSKLPLATMFKPQTNYEASLQERCKGVPVTAVKLLETLLSIDPSKRGTASSALKSEYFSTKPYACDPSVMPKYPPSKEMDARNREEASRKKMLGKGRETVTSKRNNRRVQKVSNDHINFIKPAWKEEMQNSSQNVCTGDDGRAHVAKVKIGALHKEQPKLSCDAKFEAAQVVNGCNGNSVYSGPAHVSASSGFTWAKRRKPEASSILSDGSRSKISALDPIFVKGTYDLTKQGIEVSERKHGLNTRHQDRTLTHVLPIYQAPRFHQKSFDLADKYNSNYFMEFDFTDKLDALIVDQGQRKYGEPVKLSAPKIISSDKKDELLQRNENNMRHSLRMSTSGRDQ 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00525 670 SUPERFAMILY Protein kinase-like (PK-like) 96 392 IPR011009 -
Viun5g00525 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Viun5g00525 670 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Viun5g00525 670 MobiDBLite consensus disorder prediction 405 436 - -
Viun5g00525 670 ProSiteProfiles Protein kinase domain profile. 102 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00525 670 CDD STKc_CDK9_like 102 386 - -
Viun5g00525 670 Gene3D Transferase(Phosphotransferase) domain 1 185 425 - -
Viun5g00525 670 SMART serkin_6 102 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00525 670 PANTHER CELL DIVISION PROTEIN KINASE 100 390 - -
Viun5g00525 670 FunFam probable serine/threonine-protein kinase At1g54610 89 184 - -
Viun5g00525 670 MobiDBLite consensus disorder prediction 656 670 - -
Viun5g00525 670 MobiDBLite consensus disorder prediction 397 436 - -
Viun5g00525 670 FunFam probable serine/threonine-protein kinase At1g54610 185 426 - -
Viun5g00525 670 MobiDBLite consensus disorder prediction 646 670 - -
Viun5g00525 670 Pfam Protein kinase domain 102 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00525 670 Gene3D Phosphorylase Kinase; domain 1 89 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00525 Viun-Chr5 3067584 3073538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00525 94 421 Core Cell Cycle Gene Families AT5G10270 46.571 4.98e-105 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Viun5g00525 Pkinase 1.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00525 - - vum:124825561 1177.54