Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00521 ATGTCCACTCCCAACGCCGACTCCGGCACGGCGCCGCATCAGCGCCCCACCATCACACTCCCTCCGCGTCCCTCCGCGGAGGCCTTTTTCTCCGCCGCTGGCGGCGCTAGCCCCGGTCCCATGACCCTCGTGTCTAGCTTCTTCGGTTCTGATGCCGCCGCCGACTGCCGCTCCTTCTCCCAGCTTCTTGCTGGCGCCATGGCCTCCCCGATGGCCTTCTCCACCGCCGTGGCCGACAACTCCGGCAAGGACGACGATGGGCCCCACAAGGGCTTCAAGCAGAGCAGACCCATGAATTTGGTCATTGCTCGTTCACCTGTCTTCACTGTCCCACCCGGGTTGAGCCCTTCTGGGTTTCTTAATTCCCCTGGCTTCTTTTCCCCTCAGAGCCCCTTTGGGATGTCTCACCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCGCAATCTCATATGCACATGCAAGCTGATTACCAGATGCATGCAGTAACTGCTCCTACTGAACCACCAGTACAACAGCCATCTTTTGCTCTAAACGAAGCTTCAGAGCAGCAAATAGTTCCATCTGTATCAGAAGCTAAAAATACTCAACTAGAAACTTCGGATATCTCACAGGCTGATAAGAAATATCAGCCGGCTTCCCAGGCCATTGACAAGCCTGCAGATGATGGCTACAACTGGCGCAAGTATGGGCAGAAGCAGGTTAAAGGCAGCGAGTATCCAAGAAGCTACTACAAATGTACCCATCTGAATTGCCTAGTGAAGAAAAAAGTTGAGCGTGCCCCTGATGGACACATTACTGAAATTATCTATAAAGGTCAGCATAACCATGAAAAGCCTCAGGCAAATAGACGTGTCAAGGATAATGGTGATTCAAATGGAAGTGCAAATGTTCAGCCTAAGTCCGAGTCAAACTCACAAGGTTGGGTTGGACAACAAGTAAACAAGTTTAGTGAAAACATTCCTGATTGTTCAGTTCCTGAAAGTGACCAGATCTCCAATCAAGGGGCACCTAGGCAACTACTACCTGGGTCAAGTGGGAGCGAGGAAGTTGGTGATGTAGATAATAGGGAAGAGGCAGATGACATTGAGCCAAACCCCAAGAGAAGGAATACTGATCTTGCGGTTTCTGAAGTACCTCTTTCTCAGAAGACTGTCACAGAACCCAAAATTATTGTGCAAACAAGAAGCGAAGTTGATCTTTTGGATGATGGTTACAGGTGGAGAAAGTATGGTCAGAAAGTGGTGAAGGGAAATCCTCATCCGAGGAGTTATTACAAATGCACAAGTGCAGGATGTAACGTGCGTAAGCATGTTGAAAGAGCTTCAACGGACCCCAAAGCTGTGATAACCACGTACGAGGGTAAGCATAATCATGATGTTCCTGCTGCTAGAAATAGCAGCCACAACACAGCTAATAGCAATTCAATGCCATTAAAACCGCACAACGTGGTACCAGAGAAGCACCCTTTGCTTAAAGATATGGATTTTGGAAGCAATGACCAGAGACCTGTACATTTGCGCTTGAAAGAAGAGCAAATCATAGTATAA 1557 0.4894 MSTPNADSGTAPHQRPTITLPPRPSAEAFFSAAGGASPGPMTLVSSFFGSDAAADCRSFSQLLAGAMASPMAFSTAVADNSGKDDDGPHKGFKQSRPMNLVIARSPVFTVPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHMHMQADYQMHAVTAPTEPPVQQPSFALNEASEQQIVPSVSEAKNTQLETSDISQADKKYQPASQAIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCLVKKKVERAPDGHITEIIYKGQHNHEKPQANRRVKDNGDSNGSANVQPKSESNSQGWVGQQVNKFSENIPDCSVPESDQISNQGAPRQLLPGSSGSEEVGDVDNREEADDIEPNPKRRNTDLAVSEVPLSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTANSNSMPLKPHNVVPEKHPLLKDMDFGSNDQRPVHLRLKEEQIIV 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00521 518 ProSiteProfiles WRKY domain profile. 399 464 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00521 518 Pfam WRKY DNA -binding domain 224 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00521 518 Pfam WRKY DNA -binding domain 405 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00521 518 MobiDBLite consensus disorder prediction 204 229 - -
Viun5g00521 518 MobiDBLite consensus disorder prediction 1 15 - -
Viun5g00521 518 FunFam WRKY transcription factor 33 391 457 - -
Viun5g00521 518 MobiDBLite consensus disorder prediction 289 344 - -
Viun5g00521 518 MobiDBLite consensus disorder prediction 272 383 - -
Viun5g00521 518 SUPERFAMILY WRKY DNA-binding domain 396 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g00521 518 FunFam WRKY transcription factor 211 283 - -
Viun5g00521 518 SUPERFAMILY WRKY DNA-binding domain 222 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g00521 518 SMART WRKY_cls 223 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00521 518 SMART WRKY_cls 404 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00521 518 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 122 479 IPR044810 GO:0003700
Viun5g00521 518 MobiDBLite consensus disorder prediction 272 288 - -
Viun5g00521 518 Gene3D WRKY domain 209 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g00521 518 Gene3D WRKY domain 389 465 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g00521 518 MobiDBLite consensus disorder prediction 460 483 - -
Viun5g00521 518 MobiDBLite consensus disorder prediction 1 33 - -
Viun5g00521 518 MobiDBLite consensus disorder prediction 466 482 - -
Viun5g00521 518 ProSiteProfiles WRKY domain profile. 218 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00521 Viun-Chr5 3060459 3065259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00521 15 516 WRKY Transcription Factor Family AT2G03340 52.542 1.98e-149 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g00521 WRKY 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00521 - - gmx:100796679 948.347