Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00516 ATGGGATCGTGTTTTTCAGAGAAAGAGAACCATGTTGTGGTGGAAAAAACCGACACTGAAGCCACCCTCCGTGCCATGGTGCTGGGTTCCAACGTGGTGTTTCCGGCGGCTCTAAACGCTGCAATTGAGCTCAACGTGTTTGACATAATTGCGAAGGAAGGTTCAGCGGAGAGTGATGGGTTCATGTCACCTTCTGAAATCTCTTCTAAGTTATTAATACCAACACAGCAACAACACCACCGTGATTTGACCAATCGACTGGAGCGTTTGCTGCGATTGCTTGCTAGCTACTCTCTTCTCACTGTTTCTTCTCGCAGCGACGGAGATGGTGGCAGCGTGAGAGTTTATGGGGTGTCAGCATCGGGTAAATACTTCGTGCGTGATGAAAATGGTGATGGTTACCTCGCTTCTTTCACTTCGTTTCTGTGTCACCCTGCATTATCCGGAGTGTGGCTGAATTTTAAGGAAGTGGTTATTGATCCTGAGATTGACCTATTCAAGAAGGTTCATGGAATGTCCAAGTTCGAATACTTTGGGAAATATCCTGAAATAAACCACGTATTTAACACAGCAATGCATGACATTTGCACCACCCACATGAAAAAAATACTTGAAGTATACACAGGATACGAGGGCATATCAACTTTGGTTGATGTAGGAGGTGGAACTGGACAGTGTCTCAAAATGATCATCTCCAAATACCCTTTAATTAAGGGAATTAATTTTGACCTCCCACATGTAATTGAAAACTCACCACCCATTCCAGGGGTTGAGCATGTTGGGGGGAATATGTTTGAAGGTGTTCCACAGGGTGACGCAATCATGCTTAAGGCTATAACCCATAACTGGTCCGATGAAAAAGTCATAGAACTTTTGAGCAATTGTCACAAAGCTTTGCCACCAAAGGGAAAGGTCATTGTTGGGGATTTCATACTGCCAGAAGATCCAGAACCCACAAATGAGCATAAAATGATTTCAATTCTTGATAACATCATGTTTATTACTCCTGGTGGAAGGGAAAGAACTGAGAAAGAATTTGATACTCTGGGCAAGAGTTCTGGATTTTCTAGATTTGAAGTTGTCTGTCGTGCTTTCTCTACCATGGCGCTGATGGAATTTTACAAATAA 1128 0.4317 MGSCFSEKENHVVVEKTDTEATLRAMVLGSNVVFPAALNAAIELNVFDIIAKEGSAESDGFMSPSEISSKLLIPTQQQHHRDLTNRLERLLRLLASYSLLTVSSRSDGDGGSVRVYGVSASGKYFVRDENGDGYLASFTSFLCHPALSGVWLNFKEVVIDPEIDLFKKVHGMSKFEYFGKYPEINHVFNTAMHDICTTHMKKILEVYTGYEGISTLVDVGGGTGQCLKMIISKYPLIKGINFDLPHVIENSPPIPGVEHVGGNMFEGVPQGDAIMLKAITHNWSDEKVIELLSNCHKALPPKGKVIVGDFILPEDPEPTNEHKMISILDNIMFITPGGRERTEKEFDTLGKSSGFSRFEVVCRAFSTMALMEFYK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00516 375 SUPERFAMILY "Winged helix" DNA-binding domain 18 129 IPR036390 -
Viun5g00516 375 CDD AdoMet_MTases 215 312 - -
Viun5g00516 375 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 375 IPR016461 GO:0008168
Viun5g00516 375 Gene3D Vaccinia Virus protein VP39 185 364 IPR029063 -
Viun5g00516 375 PIRSF O-mtase 3 375 IPR016461 GO:0008168
Viun5g00516 375 Pfam Dimerisation domain 37 95 IPR012967 GO:0046983
Viun5g00516 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 372 IPR029063 -
Viun5g00516 375 Pfam O-methyltransferase domain 151 356 IPR001077 GO:0008171
Viun5g00516 375 FunFam Caffeic acid O-methyltransferase 129 375 - -
Viun5g00516 375 Gene3D - 33 203 IPR036388 -
Viun5g00516 375 PANTHER O-METHYLTRANSFERASE 25 365 IPR016461 GO:0008168
Viun5g00516 375 FunFam Caffeic acid 3-O-methyltransferase 4 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00516 Viun-Chr5 3032587 3034617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00516 14 375 Monolignol Biosynthesis Gene Families AT5G54160 48.760 6.35e-110 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00516 - - gmx:100798295 608.986