Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00514 ATGGAACTGATGTTATATTTACTTGATGAAAACCTCCAGACTTATCCCCTGAGTTCAGGCCAATTATTTGTGTACTTGTCAGACATAGAGATCTATAATCTCTGTATAGAAGAAAGTTATGATCCTGCTCACTTTTATGGACGTGTGGAAGCATACCCCTTTGATGATAACCATGTGCCATCTCTTCAAATGATCAGAGATTTCTGTGAAAGTGTGGATTCATGGCTGTCAAGTGACCCCAAAAATATTGCTGTTATTCATTGCATGGCAGGAAAAGGTAGAACTGGATTAATGGTGTGTGCATACTTAACTTATTGCGGTATGTCAGCAGATGAGGCTCTTCAACTATATGCAGATAGGCGAACAACCAATAATGAAGGAGTATCAATACCAAGTCAAAGACGTTATGTGGCATATTGGGATAGTCTACTTTCTAATTGTGTTCCAAGAGGAACTGGAAATGGAACACCACAAGTGAAGTTGCCTCAACCGTTTGGCAGAGAATTGCGGCGAATCAGGCTTTATGATACAGTCAACATTGACACTATATTCTTTGTCATCTCAGAGTTACAAGAGATTCCTGATCAGGTGTATCGTCCACCAGTGGAAGCTTACCGTAGCAGCTGTAGACAGATTAAGAAAGGGTATCAGAGAAACAACAGCCCTCGCTATTATATATCTGTTCTTGAAGAGGATAGTGATGGAAAGCAATCAGAAACAGAAGAACCTCGCATTGTAGTTCAAATGGACACAGAGAGTCCTGTTATATACCAGAAGTCATGTTTGGACCATTACTTTGATAAACCTATACAAGTAACTGGAGATGTACGTGTCATATTCTATGAGAAAATGATAGGTGGTCGTCTTTTCTACTGTTGTTTTAATACAGCTTTTATTAAGAACAGCTTGCTACAGCTCACAGTACAAGAGTTGGACAAAGTTGGGAAGAAGGGAAGTTCAATATGTGGTCCTGACTTCTGCCTAGAATTATTGTTTGGTCCTGCTAATACAGGATATTCGTCATCAAATATATCCAATGATGAACATTCTAGTGATGATTCTTTGTTATAA 1071 0.3894 MELMLYLLDENLQTYPLSSGQLFVYLSDIEIYNLCIEESYDPAHFYGRVEAYPFDDNHVPSLQMIRDFCESVDSWLSSDPKNIAVIHCMAGKGRTGLMVCAYLTYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVAYWDSLLSNCVPRGTGNGTPQVKLPQPFGRELRRIRLYDTVNIDTIFFVISELQEIPDQVYRPPVEAYRSSCRQIKKGYQRNNSPRYYISVLEEDSDGKQSETEEPRIVVQMDTESPVIYQKSCLDHYFDKPIQVTGDVRVIFYEKMIGGRLFYCCFNTAFIKNSLLQLTVQELDKVGKKGSSICGPDFCLELLFGPANTGYSSSNISNDEHSSDDSLL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00514 356 Gene3D Protein tyrosine phosphatase superfamily 18 148 IPR029021 -
Viun5g00514 356 ProSiteProfiles C2 tensin-type domain profile. 180 335 IPR014020 -
Viun5g00514 356 ProSitePatterns Tyrosine specific protein phosphatases active site. 86 96 IPR016130 GO:0016311|GO:0016791
Viun5g00514 356 ProSiteProfiles Phosphatase tensin-type domain profile. 1 147 IPR029023 -
Viun5g00514 356 SMART PTEN_C2_2 162 334 IPR014020 -
Viun5g00514 356 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 239 334 IPR035892 -
Viun5g00514 356 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 66 121 IPR000387 GO:0016311|GO:0016791
Viun5g00514 356 Gene3D - 206 337 - -
Viun5g00514 356 Pfam C2 domain of PTEN tumour-suppressor protein 248 332 IPR014020 -
Viun5g00514 356 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 30 345 - -
Viun5g00514 356 Pfam Tyrosine phosphatase family 80 118 IPR026893 GO:0004721
Viun5g00514 356 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 28 146 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00514 Viun-Chr5 3025817 3029115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00514 30 339 Protein tyrosine phosphatase (PTP) family AT5G39400 67.949 3.62e-157 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00514 K01110 - gmx:100809938 607.446