Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00513 ATGGGGTTGAAACTTACAAAGCAGGAACCACCCAAAGCTGAGGACCTAAGTATACATCATCACATGATCAATTACCTAACCAAGAATTTTATTCGTAACTTGGTATCTAAGCAACGGAGGAGAATGCTTATAGCTGGTTATGATCTTGACATGTCATATATCACCGATAGAGTATTAGCAATGTCATTTCCTTCTCAACGAATGCGAGCAATGTATCGAAATCCTCTCTGGCAGGTTAAATCTGTGTTGGACATGAGACATTATGAGCATTATAAGATCTATAATCTCTGTATAGAAGAAAGTTATGATCCTGCTCACTTTTATGGACGTGTGGAAGCATACCCCTTTGATGATAACCATGTGCCATCTCTTCAAATGATCAGAGATTTCTGTGAAAGTGTGGATTCATGGCTGTCAAGTGACCCCAAAAATATTGCTGTTATTCATTGCATGGCAGGAAAAGGTAGAACTGGATTAATGGTGTGTGCATACTTAACTTATTGCGGTATGTCAGCAGATGAGGCTCTTCAACTATATGCAGATAGGCGAACAACCAATAATGAAGGAGTATCAATACCAAGTCAAAGACGTTATGTGGCATATTGGGATAGTCTACTTTCTAATTGTGTTCCAAGAGGAACTGGAAATGGAACACCACAAGTGAAGTTGCCTCAACCGTTTGGCAGAGAATTGCGGCGAATCAGGCTTTATGATACAGTCAACATTGACACTATATTCTTTGTCATCTCAGAGTTACAAGAGATTCCTGATCAGGTGTATCGTCCACCAGTGGAAGCTTACCGTAGCAGCTGTAGACAGATTAAGAAAGGGTATCAGAGAAACAACAGCCCTCGCTATTATATATCTGTTCTTGAAGAGGATAGTGATGGAAAGCAATCAGAAACAGAAGAACCTCGCATTGTAGTTCAAATGGACACAGAGAGTCCTGTTATATACCAGAAGTCATGTTTGGACCATTACTTTGATAAACCTATACAAGTAACTGGAGATGTACGTGTCATATTCTATGAGAAAATGATAGGTGGTCGTCTTTTCTACTGTTGTTTTAATACAGCTTTTATTAAGAACAGCTTGCTACAGCTCACAGTACAAGAGTTGGACAAAGTTGGGAAGAAGGGAAGTTCAATATGTGGTCCTGACTTCTGCCTAGAATTATTGTTTGGTCCTGCTAATACAGGATATTCGTCATCAAATATATCCAATGATGAACATTCTAGTGATGATTCTTTGTTATAA 1257 0.3898 MGLKLTKQEPPKAEDLSIHHHMINYLTKNFIRNLVSKQRRRMLIAGYDLDMSYITDRVLAMSFPSQRMRAMYRNPLWQVKSVLDMRHYEHYKIYNLCIEESYDPAHFYGRVEAYPFDDNHVPSLQMIRDFCESVDSWLSSDPKNIAVIHCMAGKGRTGLMVCAYLTYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVAYWDSLLSNCVPRGTGNGTPQVKLPQPFGRELRRIRLYDTVNIDTIFFVISELQEIPDQVYRPPVEAYRSSCRQIKKGYQRNNSPRYYISVLEEDSDGKQSETEEPRIVVQMDTESPVIYQKSCLDHYFDKPIQVTGDVRVIFYEKMIGGRLFYCCFNTAFIKNSLLQLTVQELDKVGKKGSSICGPDFCLELLFGPANTGYSSSNISNDEHSSDDSLL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00513 418 Pfam C2 domain of PTEN tumour-suppressor protein 311 394 IPR014020 -
Viun5g00513 418 ProSiteProfiles Phosphatase tensin-type domain profile. 40 209 IPR029023 -
Viun5g00513 418 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 183 IPR000387 GO:0016311|GO:0016791
Viun5g00513 418 CDD PTP_PTEN 50 205 IPR045101 GO:0016791
Viun5g00513 418 Pfam Tyrosine phosphatase family 142 180 IPR026893 GO:0004721
Viun5g00513 418 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 20 407 - -
Viun5g00513 418 Gene3D Protein tyrosine phosphatase superfamily 26 210 IPR029021 -
Viun5g00513 418 SMART PTEN_C2_2 224 396 IPR014020 -
Viun5g00513 418 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 301 396 IPR035892 -
Viun5g00513 418 Gene3D - 268 399 - -
Viun5g00513 418 ProSiteProfiles C2 tensin-type domain profile. 242 397 IPR014020 -
Viun5g00513 418 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 27 210 - -
Viun5g00513 418 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Viun5g00513 418 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 208 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00513 Viun-Chr5 3024154 3029115 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00513 1 401 Protein tyrosine phosphatase (PTP) family AT5G39400 66.914 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00513 K01110 - gmx:100809938 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00513 5 3024154 3029115 Viun5g00513 5 3024154 3029115 ECH