LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g00512	ATGCCCAACACCTTCTCCTCTCTCTTCTGGTGGATTGGTAAAAAGTTGCGAAGAAGGAACACGGATAGTAATGGGGAGAGTGGGAACAACGACAACGTTGGCGGTGCCGTTGTTGTGGATGATAACCCGTTTGGCAGCACGGTAGAGTGTTACGCTTGCACGCAGGTTGGCGTGCCGGTGTTTCACTCCACCAGCTGCGACAGTTTTAACCAGCCGCAATGGGAGGCTTCGGCCGGGTCCTCCCTGGTTCCGATTCAGAATCGGCCCAATAAGGTTCTCCGGTTTCGGGCTGCGTCCGGTTCGAATATTGGACCGTTTGGGCGGGTTTTGGATCCGCGGAGCAAGCGCGTCCAAAAGTGGAACCGCGCGCTGCTGCTGGCGCGTGGTGTGGCGTTGGCGATTGACCCGCTGTTCTTCTACTCGCTTTCGATCGGCAGGGAGGGTTCGCCGTGCCTGTACATGGACGGAGGGCTGGCGGCGATGGTGACGGTGGCGCGGACTTGCGTGGACGCGGTGCACCTCTTGCACGTGTGGCTGCAGTTCAGGCTGGCGTACGTGTCGCGCGAGTCGCTGGTTGTGGGGTGTGGGAAACTGGTGTGGGACGCGCGTGAGATTGCGTCGCATTACCTGCGGTCGTTGAAGGGGTTCTGGTTCGACGCATTCGTGATCCTCCCAGTTCCCCAGGCTGTGTTTTGGTTGATAGTGCCAAAATTGATAAGAGAAGAGCGAATCAAAATCATTATGACCATAATGCTATTGATTTTTTTGTTCCAATTTCTCCCCAAGGTTTACCACAGCATCTGCATGATGAGGAGAATGCAAAAAGTCACGGGCTACATCTTTGGAACCATTTGGTGGGGCTTTGGTCTCAATCTCATAGCTTATTTTATTGCTTCCCATGTTGCTGGAGGGTGCTGGTACGTCCTTGCAATTCAACGAGTTGCGTCATGCCTTCGGCAGCAGTGTGAGAGAACTAATGGATGCAATCTTTCTGTGTCGTGCTCAGAGGAGGTATGCTACCAGTCTTTGTCAGGCGCAATAGGAGATTCTTGTGGTGGAAACTCAACAGTAGCGTTGAAAAAGCCTTATTGCTTAGATGTTGAAGGACCTTTCAAATATGGGATCTACCAATGGGCACTTCCAGTCATATCAAGCAACTCTTTGGCTGTAAAGATTCTTTATCCCATTTTTTGGGGTTTGATGACCCTCAGCACTTTCGGAAATGATCTTGAACCCACAAGTAACTGGCTGGAAGTAATTTTCAGCATATGCATCGTACTCAGTGGACTATTGCTTTTCACATTGTTGATTGGTAACATTCAGGTATTCTTACATGCTGTGATGGCAAAGAAGAGAAAGATGCAGCTGAGATGTCGAGATATGGAGTGGTGGATGAGGAGGAGGCAGTTGCCGTCACGATTAAGGCAAAGAGTTCGCCATTTTGAACGTCAGAGATGGGCTGCCATGGGAGGAGAAGATGAAATGGAAATGATCAAAGACTTGCCTGAGGGGCTGAGGAGGGACATCAAGCGCCATCTTTGCCTCGACCTCATTAGAAAGGTTCCTTTGTTCCACAACTTGGATGAACTTATTCTTGACAACATCTGTGACAGGGTGAGGCCCTTGGTGTTCTCTAAAGATGAAAAGATAATCAGAGAAGGTGATCCTGTACCAAGGATGGTGTTCATCGTGAGAGGACGCATAAAACGCAGCCAAAGTCTGAGCAAAGGCATGGTGGCCTCAAGCATCCTTGAGCCAGGAGGGTTTTTGGGGGACGAGCTACTTTCATGGTGCCTTCGCCGGCCGTTTATCGACAGACTTCCGGCGTCCTCAGCCACATTTGTGTGCCTTGAATCAGCAGAAGCCTTTGGCCTTGATGCAGAGCACTTGAGGTACATCACCGATCACTTCAGGTACAAGTTTGCCAACGAGAGGCTGAAGAGAACAGCAAGATATTACTCATCCAATTGGAGAACCTGGGCTGCTGTCAACATTCAATTTGCTTGGAGACGTTACAGGCAGAGGACTAGAGGTCCGGTGACCCCTGTAAGAGAGAGTGGAGGCACTGAGCGCAGGCTCTTGCAATATGCTGCAATGTTCATGTCAATAAGGCCACATGACCATCTTGAATGA	2133	0.5049	MPNTFSSLFWWIGKKLRRRNTDSNGESGNNDNVGGAVVVDDNPFGSTVECYACTQVGVPVFHSTSCDSFNQPQWEASAGSSLVPIQNRPNKVLRFRAASGSNIGPFGRVLDPRSKRVQKWNRALLLARGVALAIDPLFFYSLSIGREGSPCLYMDGGLAAMVTVARTCVDAVHLLHVWLQFRLAYVSRESLVVGCGKLVWDAREIASHYLRSLKGFWFDAFVILPVPQAVFWLIVPKLIREERIKIIMTIMLLIFLFQFLPKVYHSICMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCERTNGCNLSVSCSEEVCYQSLSGAIGDSCGGNSTVALKKPYCLDVEGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMEMIKDLPEGLRRDIKRHLCLDLIRKVPLFHNLDELILDNICDRVRPLVFSKDEKIIREGDPVPRMVFIVRGRIKRSQSLSKGMVASSILEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESAEAFGLDAEHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRQRTRGPVTPVRESGGTERRLLQYAAMFMSIRPHDHLE	710

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g00512	710	SUPERFAMILY	Voltage-gated potassium channels	111	444	-	-
	Viun5g00512	710	SUPERFAMILY	cAMP-binding domain-like	450	637	IPR018490	-
	Viun5g00512	710	CDD	CAP_ED	523	633	IPR000595	-
	Viun5g00512	710	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	98	676	-	-
	Viun5g00512	710	ProSiteProfiles	cAMP/cGMP binding motif profile.	523	633	IPR000595	-
	Viun5g00512	710	SMART	cnmp_10	523	649	IPR000595	-
	Viun5g00512	710	Gene3D	-	151	446	-	-
	Viun5g00512	710	Gene3D	Jelly Rolls	521	639	IPR014710	-
	Viun5g00512	710	Gene3D	Helix hairpin bin	449	514	-	-
	Viun5g00512	710	Pfam	Ion transport protein	120	441	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g00512	Viun-Chr5	3017899	3023556	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g00512	11	710	Ion Channels	AT5G15410	76.389	0.0	1053

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g00512	K05391		-	gmx:100798823	1311.59

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