Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00510 ATGTGGAACTTTGCATCTAGTCTCATTTCTGGAAGTGTGGGTCTGAAAAATGAATATGATTCTCCAAAGTCAATTCAACCTGCTTCAGAATATTCTGATGACGACACTTCTATGGTGAGCAGAGAGGAAAGGCTGGAATGCCCAATATGCTGGGAATCCTTTAACATTGTTGAAAATGTGCCTTATGTCTTATGGTGTGGTCACACTCTTTGTAAAAATTGCATCCTTGGATTACAATGGGCTGTGGTGAAATTTCCAACACTGCCAATTCAGCTTCCACTGTTTATCTCCTGCCCATGGTGTAACCTTTTGTCTCTGCGTTTAGTATACCAGGGAAATCTGAAATTCCCTCGCAAGAACTATTTTCTTCTTTGGATGGTTGAGAGCATGAACGGTGATGGAGTGAAGTCACATTCTACTGTTTGTGGGGATCATCAACCAGTTTGGCAAATTAAAGACAGCTTAGCAACTGTAAGTCAAGTAAGCCATGGCAGCCTTCAGAGAGAACAAATTTGCCATCCAGAGTCTCCAGTTTCCAATCAGAGTCATGGAAATACCAGTAATTACCTTAGTATAGAAACCCTGCATACATCCCTGCGGAAGTCGCTGCTTTTATTTATTCACTTGACTGCAAAGTTCCCATTGATCATTATTTTTCTTTTGATTGTCTTATATGCAATACCAGCCAGTGCAGCCATTTTGGCTCTGTATATACTTATTACCATTCTGTTTGCTCTCCCGTCATTTCTCACGTTGTACTTTGCATATCCTAGTTTGGATTGGCTTGTCAGGGAAATTATCAATTGA 807 0.4052 MWNFASSLISGSVGLKNEYDSPKSIQPASEYSDDDTSMVSREERLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSLRLVYQGNLKFPRKNYFLLWMVESMNGDGVKSHSTVCGDHQPVWQIKDSLATVSQVSHGSLQREQICHPESPVSNQSHGNTSNYLSIETLHTSLRKSLLLFIHLTAKFPLIIIFLLIVLYAIPASAAILALYILITILFALPSFLTLYFAYPSLDWLVREIIN 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00510 268 PANTHER UBIQUITIN-PROTEIN LIGASE 1 268 - -
Viun5g00510 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 138 IPR013083 -
Viun5g00510 268 ProSitePatterns Zinc finger RING-type signature. 66 75 IPR017907 -
Viun5g00510 268 SUPERFAMILY RING/U-box 46 105 - -
Viun5g00510 268 Pfam RING-type zinc-finger 47 80 IPR027370 -
Viun5g00510 268 ProSiteProfiles Zinc finger RING-type profile. 47 102 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00510 Viun-Chr5 3002909 3004855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00510 1 267 Miscellaneous Gene Families AT3G29270 60.821 4.05e-110 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00510 - - gmx:100799346 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00742 4 5620257 5624165 Viun5g00510 5 3002909 3004855 PCT