Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00495 ATGGTGATGGCTTTGTCTAAGAGTTTGGTTCCTTTGGTCCTTTTAATGGTTCTCTCTGTACCAGCTTTCTCACTTCACAGTAAATGGCATCATGCCCCTGCAGTTCACAATAAATGGCATCATCCCCCTGCAGTTCACAGTATATGGCATAATGCCCGTGCAACTTTCTATGGTGACATGCAAGGTGGAGAAACCATGCAGGGAGCTTGTGGTTATGGTGATCTGTTCCAGCAAGGTTACGGGCTTGAAACCGCAGCCCTAAGCACAGCACTGTTCAACAATGGCCTGAGTTGTGGTGCATGTTTTGAGATCAAGTGTGTGAACGATCCTCAATGGTGCATTCCCAATGCAGGCTCAATCAAAATAACTGCAACAAATTTCTGTCCACCCAATTACTCCCCACCGAATTTCGACCACTGGTGCAACCCTCCACAGAAACACTTCGACTTGTCCATGAAAATGTTCACCACCATTGCCGCATACAGAGCTGGGATCATCCCGGTGAAGTATCGCAGAGTGCCATGCACCAAAACTGGCGGTGTCAGGTTCCAAACTGCAGGGAACCCTTATTGGCTTCTGGTTTTGGTGTACAACGTTGGCAATGCCGGTGATGTTCATGAGGTCAGCATCAAGGGATCTGATGGTGTGTGGAAATCCATGTCTAGGGTTTGGGGACAGAATTGGTTGACCGGAGAAAACTTGGTCGGAAAATGTTTGTCCTTTAAGGTGGGTACCAGTGATGGAAAAGTGGTGGAGTTCGACGAGGTTGCACCTTCTTATTGGCAATTTGGGCAGAGCTACGAAGCCAGCAGAAATTTTTAG 822 0.4769 MVMALSKSLVPLVLLMVLSVPAFSLHSKWHHAPAVHNKWHHPPAVHSIWHNARATFYGDMQGGETMQGACGYGDLFQQGYGLETAALSTALFNNGLSCGACFEIKCVNDPQWCIPNAGSIKITATNFCPPNYSPPNFDHWCNPPQKHFDLSMKMFTTIAAYRAGIIPVKYRRVPCTKTGGVRFQTAGNPYWLLVLVYNVGNAGDVHEVSIKGSDGVWKSMSRVWGQNWLTGENLVGKCLSFKVGTSDGKVVEFDEVAPSYWQFGQSYEASRNF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00495 273 CDD DPBB_EXPA_N 49 175 - -
Viun5g00495 273 Gene3D - 179 273 IPR036749 -
Viun5g00495 273 PRINTS Expansin signature 155 168 IPR002963 GO:0009664
Viun5g00495 273 PRINTS Expansin signature 255 271 IPR002963 GO:0009664
Viun5g00495 273 PRINTS Expansin signature 120 130 IPR002963 GO:0009664
Viun5g00495 273 PRINTS Expansin signature 138 155 IPR002963 GO:0009664
Viun5g00495 273 PRINTS Expansin signature 191 212 IPR002963 GO:0009664
Viun5g00495 273 PRINTS Expansin signature 226 247 IPR002963 GO:0009664
Viun5g00495 273 PRINTS Expansin signature 79 93 IPR002963 GO:0009664
Viun5g00495 273 PRINTS Expansin signature 179 191 IPR002963 GO:0009664
Viun5g00495 273 PRINTS Expansin signature 106 117 IPR002963 GO:0009664
Viun5g00495 273 SUPERFAMILY PHL pollen allergen 177 268 IPR036749 -
Viun5g00495 273 PANTHER EXPANSIN-A15 23 271 IPR002963 GO:0009664
Viun5g00495 273 Gene3D - 33 176 IPR036908 -
Viun5g00495 273 Pfam Lytic transglycolase 84 170 IPR009009 -
Viun5g00495 273 SMART dpbb_1 84 170 IPR007112 -
Viun5g00495 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 269 IPR007117 -
Viun5g00495 273 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Viun5g00495 273 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Viun5g00495 273 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Viun5g00495 273 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Viun5g00495 273 PRINTS Expansin/Lol pI family signature 163 179 IPR007118 GO:0005576
Viun5g00495 273 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Viun5g00495 273 SUPERFAMILY Barwin-like endoglucanases 48 198 IPR036908 -
Viun5g00495 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 180 IPR007112 -
Viun5g00495 273 Pfam Expansin C-terminal domain 181 258 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00495 Viun-Chr5 2937358 2939465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00495 1 273 Expansin Gene Family AT5G39280 55.678 2.13e-112 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00495 - - gsj:114422475 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00495 5 2937358 2939465 Viun5g00495 5 2937358 2939465 ECH