Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00474 ATGGCGTTTTTAAATAAAATTGGAAATCTACTCAAGAATTCTGCTGTCAAGCACATCAATCAAGATTTTTCTGCGTCTACCCCCTCGCTTTTCCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTTTGTCGGAGGTATTTCTTACAGCACTGATGATATGAGCCTTCGGGAAGCATTTGCTCGCTATGGAGAAGTTCTTGATGTCAGGGTTATTATGGATCGTGAAACTGGCAGATCAAGAGGTTTTGCCTTCATAACCTTTGCAACAAGTGAGGATGCATCTTCTGCCATTCAGGCCTTGGATGGTCAGGATCTTCATGGTCGGAGAATTCGGGTGAATTATGCTACAGAAAGGTCACGCCCAGGGTTTGGAGGTGGTGGAGGTGGCTATGGTGGAGGTGGTGGTTATGGTGGTGGTGGAGGTGGCTATGGTGGCGGTGGTGGTTATGGTGGTGGTGGAGGTGGAGGTGGCTATGGTAGAGATAGTTATGGAGGAAACAACAGCAGGGGTGGAAGCTATGGAAGTGGTGGTTATGGTGTTCAAGGAAGCTATGGTGGTGGCAATGCTGAAACTAGTTACACTAGTGGTGGTGATGCTAGTAATTACCAATTTGGTGGAAATTCTGGTGGGGATCTTGGCTCAGCTAGTGGTGAATTCGGAAGCAGCCAAAATGAAGGAACAGGCGCAGCAGACAATGATGAATTCAATCCACTTGAAGACAATGTGAGGGGGAACAGTGATGAACAACCTGATGACTATGCTCAGACCCGTAGGTGA 780 0.4692 MAFLNKIGNLLKNSAVKHINQDFSASTPSLFQAIRSMSSAKLFVGGISYSTDDMSLREAFARYGEVLDVRVIMDRETGRSRGFAFITFATSEDASSAIQALDGQDLHGRRIRVNYATERSRPGFGGGGGGYGGGGGYGGGGGGYGGGGGYGGGGGGGGYGRDSYGGNNSRGGSYGSGGYGVQGSYGGGNAETSYTSGGDASNYQFGGNSGGDLGSASGEFGSSQNEGTGAADNDEFNPLEDNVRGNSDEQPDDYAQTRR 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00474 259 SMART rrm1_1 41 114 IPR000504 GO:0003723
Viun5g00474 259 PRINTS Eggshell protein signature 150 160 - -
Viun5g00474 259 PRINTS Eggshell protein signature 36 52 - -
Viun5g00474 259 PRINTS Eggshell protein signature 125 140 - -
Viun5g00474 259 PRINTS Eggshell protein signature 176 194 - -
Viun5g00474 259 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 211 - -
Viun5g00474 259 MobiDBLite consensus disorder prediction 193 231 - -
Viun5g00474 259 MobiDBLite consensus disorder prediction 237 259 - -
Viun5g00474 259 Gene3D - 20 157 IPR012677 -
Viun5g00474 259 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 144 - -
Viun5g00474 259 MobiDBLite consensus disorder prediction 193 259 - -
Viun5g00474 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Viun5g00474 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Viun5g00474 259 CDD RRM2_NsCP33_like 41 116 - -
Viun5g00474 259 SUPERFAMILY RNA-binding domain, RBD 17 133 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00474 Viun-Chr5 2821945 2824869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00474 42 166 Eukaryotic Initiation Factors Gene Family AT1G49760 27.273 3.86e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00474 K12741 - gmx:100807155 313.153