Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00458 ATGGCTTCCCACAACCTCAAAATCCATGAACAGTGCTCTGTTGCTCCTCCCTCTGCACCCCAAACATCCCTCCCTCTCGTATTCTTCGACATGTTCTGGCTGAGGTTTCACCCTGTGGAACGCATCTTCTTCTATTCCCTCCCTGTAACCCATTCAAACCCATCCATTTTCTTCACCCAAGTTGTTCCAAACCTCAAAACTTCACTCTCTCACACCCTCCAACACTTTTCCCCTCTCGCCGGCAACATCCTGTGGCCCAATGGTTCTTCCAACCCCGTCGTTCAATACACCCCAGGCGACGCCGTTTCGGTGGTGCTTGCAGAATCCGAAGCCGATTTCGACCACGCGTTGGACAACGCACCCAAAGAAGCATCAGAGTTACGTTGTTTGGTGCCCAACTTGGAATCTTCTGATTCTCATGCCTCTGTTATGGCTATCCAAATCACTCTGTTCCCTAACAGAGGGTTCGCCATAGGAATCAGCACTCACCACGCCGTCCTTGATGGAAAAACTTCAACTCTTTTCATCAAAGCTTGGGCTTCTCTGTGTAAAACCAATGATGATGATTCATCATCAACACGATCTTTGGCTCCAGAATTGGAGCCTTTCTTTGACAGAACAGTCATCAAAAGCCCGAATGAGTTAGGGTTCAACTTATCACTCGATTTGGCTGAGCTCGTAACCAAAATGTTCCCAGGTGAAAACAGCGACGAAAGATGCTTGAAGCTTCTACCTTTCCCTCCAAGATTGGAGGATCAGGTTCGAGGGACATTCATGCTCACGGTAGCAGATTTGGAGAGATTAAAGAATAGGGTGCTGTCCAAGTGGGACAGTGTAGACGACGTAGTTGAAGCAAAATCAAACTCAAACTCGAAATCAACTTCTTCAAAACCAACCAAACTGTCGACTTTTGTTGTAACCTGCGCTTATACTGTGGTTTGCATTGCGAAGGCCTTGCACGGAGTTGAAAAAGAGAAAAATAAGTTTTCTTTTACGTTCACCGGGGATTGCAGGGCCAGGTTGGAGCCTCCGATTCCTGAAAACTACTTTGGGAACTGTGTGTGGGGGAATTTGGTGGATGCTAAGCCATCGGCATTTATAGAGAAGGAAGGGTTTGTTATTATTGCCAAAAGTATTCATAGTAAAATAAAAGATATATTAGATAAGGGTGTTTTTCATGAAGTAGATGATGTTCTTCCTAGATATGCAGCTTTGGCAAAAGAAAGAGTTGAGATGATAGCAACTGCAGGGTCTAACCGTTTTGGGGTTTATGGGAATGATTTTGGTTGGGGAAAGCCTTCAAAGGTGGAGATTGCATCGGTTGATAGAGCCCTAACAGTTGGATTGGCAGAGAAGAGAGATGAGAAAGGTGGTGTTGAAGTTGGGATTGTTCTGAAGAGACCAGTGATGGAACTGTTTGGTACTTTGTTTCATGGAGGATTAACATATGAGTGA 1455 0.4529 MASHNLKIHEQCSVAPPSAPQTSLPLVFFDMFWLRFHPVERIFFYSLPVTHSNPSIFFTQVVPNLKTSLSHTLQHFSPLAGNILWPNGSSNPVVQYTPGDAVSVVLAESEADFDHALDNAPKEASELRCLVPNLESSDSHASVMAIQITLFPNRGFAIGISTHHAVLDGKTSTLFIKAWASLCKTNDDDSSSTRSLAPELEPFFDRTVIKSPNELGFNLSLDLAELVTKMFPGENSDERCLKLLPFPPRLEDQVRGTFMLTVADLERLKNRVLSKWDSVDDVVEAKSNSNSKSTSSKPTKLSTFVVTCAYTVVCIAKALHGVEKEKNKFSFTFTGDCRARLEPPIPENYFGNCVWGNLVDAKPSAFIEKEGFVIIAKSIHSKIKDILDKGVFHEVDDVLPRYAALAKERVEMIATAGSNRFGVYGNDFGWGKPSKVEIASVDRALTVGLAEKRDEKGGVEVGIVLKRPVMELFGTLFHGGLTYE 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00458 484 Gene3D - 249 483 IPR023213 -
Viun5g00458 484 Gene3D - 6 229 IPR023213 -
Viun5g00458 484 Pfam Transferase family 19 473 - -
Viun5g00458 484 PANTHER - 6 481 - -
Viun5g00458 484 SUPERFAMILY CoA-dependent acyltransferases 295 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00458 Viun-Chr5 2652221 2654159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00458 6 473 Monolignol Biosynthesis Gene Families AT5G48930 23.480 2.96e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00458 - - gmx:100815354 699.508