Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00452 ATGGTACTGTGGAACAGAATTTTGACAAGCATAAAGTGGAAGGACAAAACTCTGCACCTAGCTACCAACAATGAGATACATAAGATCATGATTAAGAGCCCAAAAGAAGTGGATTTTGCTTTAAAACAAGAGGGTGGTCATTCTCAATCAATTAGTGATCCTGAAAAGGCAAAGGCTTCATCAAGCTCAGTAGCACAATGGCCAAGATTGAAGGATCCAAGAATTGTTCGAGTCTCTAGAGCCTTTGGAGGGAAAGACAGGCACAGCAAGGTCTGCACAGTAAGAGGGTTAAGAGACAGACGGGTGCGATTATCAGTACCAACTGCTATCCAACTCTATGATCTTCAAGATAGGTTAGGGCTCAGTCAACCCAGCAAGGTTGTTGATTGGTTGCTGAATGCTGCTAAGCATGAAATTGATGAACTTCCACCACTGCCACTTATTCCTTCAGTGAATAACTTCACCCTTGGTTATCATCCATCTGCTGTTACTTCTAATGATGCCACAAACCCTCACTCTCAGCAGAATGAACAAGTTCTTAATATAAATAGCAGCATTCAGTGGCAAGGTTCAGACCAAAATTCTTCATGGAAATTAAAGCGTAAAGAAGTTTCAGGAGAAATGATCAGCACTGATCAGGATGAGCAAGGAAGCAATAATGAAGGTCCTAGCACACATGTTATGCCAAATAATCTTTTGCCAAGGGTTAACCATAATTCATTCTTGGGCCTGCTAAATGCTATGCCACAAGGTTACCAGTGGGAAGCTTCCGCTGGTGATGTTTCTCATCCTCAGTTGCCAAACAATGGATTTTCTAACCAAACAGACATACATAACGTTGTACCTTTCCCAACATCAACATTGTCTTTATCAACAGGGAATTCTCAAATTCTGCTGTGTCCTCCGGGAGCAGCACAGCCATATTTCCCATCACATTTTACAGCAATGGACATGGATCAGAGGCAAATCAACCACCACTATCAGATGATGAGTTCAGGTTCTCAAAACCCATTGGCGAATTCTCTCAATCATTCTTTTAGCTTTGCTATGATGTCTCATAAACCCCTCCATTCACCCAACAGCAGCAAAAGCCCTTCCGACAAACACCAAGATTTCCCTTCCAAGTGA 1128 0.422 MVLWNRILTSIKWKDKTLHLATNNEIHKIMIKSPKEVDFALKQEGGHSQSISDPEKAKASSSSVAQWPRLKDPRIVRVSRAFGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPLIPSVNNFTLGYHPSAVTSNDATNPHSQQNEQVLNINSSIQWQGSDQNSSWKLKRKEVSGEMISTDQDEQGSNNEGPSTHVMPNNLLPRVNHNSFLGLLNAMPQGYQWEASAGDVSHPQLPNNGFSNQTDIHNVVPFPTSTLSLSTGNSQILLCPPGAAQPYFPSHFTAMDMDQRQINHHYQMMSSGSQNPLANSLNHSFSFAMMSHKPLHSPNSSKSPSDKHQDFPSK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00452 375 ProSiteProfiles TCP domain profile. 84 142 IPR017887 -
Viun5g00452 375 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 50 351 IPR005333 GO:0003700
Viun5g00452 375 MobiDBLite consensus disorder prediction 210 226 - -
Viun5g00452 375 MobiDBLite consensus disorder prediction 45 64 - -
Viun5g00452 375 MobiDBLite consensus disorder prediction 352 375 - -
Viun5g00452 375 Pfam TCP family transcription factor 84 212 IPR017887 -
Viun5g00452 375 MobiDBLite consensus disorder prediction 191 226 - -
Viun5g00452 375 MobiDBLite consensus disorder prediction 44 64 - -
Viun5g00452 375 MobiDBLite consensus disorder prediction 352 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00452 Viun-Chr5 2596569 2598862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00452 67 329 TCP Transcription Factor Family AT3G02150 41.606 9.76e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun5g00452 TCP 4.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00452 - - var:108327895 680.633