Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00437 AATGGGACAACGTTTAAGCATACAGGTTCGTCTCAGCGACAGTATCCAACTGTGATAGAAGAGCTATGCACTCAATTTTCTCTGGCCGATCTTAGGAAATCGACAAACAACTTTAACGAAAACCAAATAATTGGAAGTGGAGGCCTTGGCACTGTATACAAAGGCTCTCTTCAAAACAGTAGTGTTACTGAGTCCACAATTGTAATCAAGCGAATATATGGGATCACTGAGAAGGAACTTAAGCAGTTCAAGAACGAAATCGAGTTGCTCTGCCAGTTTCGCCATCCAAATTTGGTCACTCTATTAGGATTTTGTGACCACAAAGACGAGAAGAATATTGTATATGAGTACATGGCCAATGGATCTCTCCATCATAGCCTATATCGTAGGGATATGAAAATGGAGCCACTAACATGGAAGCAGAGGCTAAAGATCTGCATAGGAGTAGCACAGGGACTACACTACCTTCACACAGGTCTCAAGAGAACAATTTTTCATCGTGACATAACACCTTATAAAATTCTTCTGGATAGCAACATGGTGGCCAAACTCTCAGACTTCCGACTTTCCTTAACAGGACCACATTATGCATCAAAGCCAGAACCAAAGACAATAACAAAAGATGGCTTCACAGGTACACTTGGCTACGTGGCTCCTGAGATTTCAGAAAACAATATATTAACAGAGAAAAGCGATGTTTACTCCTTTGGTGTAGTTCTACTAGAAGTGGTATGCAAAGACAAGCTAAACAGTGTTGAGAAGAGGCAGAAACACCCTGTTGAGGAGAATATTGATCCAAATATTGAAGGAAAGATTGCACCAGAGAGTTGGGAAGTATTTATAGACATCACAGAAAGATGCTTGAACTTTGATCCTAATGAGCGACCATCAACGGGTGAAGTGGAGATTCAACTTGAGCTTGCTCTGCCACTGCAGGAAGAAGCGGATGCAAGAAATACTTGTGATGATTATACCCTATTATCTCTTACCATTATTAATTAG 1002 0.4072 NGTTFKHTGSSQRQYPTVIEELCTQFSLADLRKSTNNFNENQIIGSGGLGTVYKGSLQNSSVTESTIVIKRIYGITEKELKQFKNEIELLCQFRHPNLVTLLGFCDHKDEKNIVYEYMANGSLHHSLYRRDMKMEPLTWKQRLKICIGVAQGLHYLHTGLKRTIFHRDITPYKILLDSNMVAKLSDFRLSLTGPHYASKPEPKTITKDGFTGTLGYVAPEISENNILTEKSDVYSFGVVLLEVVCKDKLNSVEKRQKHPVEENIDPNIEGKIAPESWEVFIDITERCLNFDPNERPSTGEVEIQLELALPLQEEADARNTCDDYTLLSLTIIN 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00437 333 Gene3D Phosphorylase Kinase; domain 1 2 117 - -
Viun5g00437 333 Gene3D Transferase(Phosphotransferase) domain 1 118 326 - -
Viun5g00437 333 FunFam Receptor-like protein kinase ANXUR2 4 117 - -
Viun5g00437 333 PANTHER OS07G0166700 PROTEIN 23 312 IPR045272 GO:0004714|GO:0006468
Viun5g00437 333 ProSiteProfiles Protein kinase domain profile. 38 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00437 333 Pfam Protein tyrosine and serine/threonine kinase 41 301 IPR001245 GO:0004672|GO:0006468
Viun5g00437 333 FunFam Receptor-like protein kinase ANXUR2 118 327 - -
Viun5g00437 333 SUPERFAMILY Protein kinase-like (PK-like) 13 309 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00437 Viun-Chr5 2522444 2523526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00437 2 319 Receptor kinase-like Gene Family AT5G38990 43.114 2.51e-79 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Viun5g00437 PK_Tyr_Ser-Thr 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00437 - - gmx:100779112 535.798