Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00434 ATGGGTCTTCTTTCACTTTTGTCATGTTTCTCTAAACCTGAGGCAGGGGTAAACAGATTACTCGTGACAACAACCTTCAACATCATGGGAGAACATTGCCACCACTTTTCACTTGCAGAGATACAGTCATCACTAACGAATGTTAAGGAATCTTTGGTGATTGGAGAAGATTCATTCGGAGTAGTGTACAAGGGTTTTCTGAACAAAGGTGCTACCACTGTTGCAATAAAGTGTTTCAACAAAGGTTCTCTTTCTGGTCTCTCAGAATCACAGTTGAAGAACGAGGTTCTCTTCCTTTGTCAACTCCACCACCCCAACATCATGCCTGTAATTGGATTTTGCATTGAAAGATTCCCCCATCTGATTCTTGTACATGAATACATGTTTAACGGTTCCCTCAATGATCACCTTCATCTTACAAATAATCACAAATTTGTTCCACTTTCGTGGGAAAGGAGGCTTCGAATTTGCATTGGTGTGGCACGTGGATTGCACTATCTGCACACAGGAGGCAAGTGTTCTGTGATACATAATTTTTTCAAAACACAGTACATCCTTTTGGATCAAAACTGGGAACCTAAAATTTCTGGTTTATTGTTGTCAAAAAGGGGATCCGTTGATGTTGCAAGTTCATTTCTTGTTGCGAGAAACCATGATACTTTCGCATATTGTGATCCTGAGTATGCAGCCTCTGGTATCTTGACTGTGAAATCAAATGTGTTTTCATTTGGTGTGGTTCTGTTGGAAGTTGTGAGTGCAAAGCAAGCGCGAGATTTGTACTTGGAACGTGTGAAGAACCCGAATTATTCAGTGGAGTTACATGCAGAAAAAATAGTTGATCCGTTTATTAAGTCCAAAATTGCTCCAGATTGTTGGAAAACGTTCATTGATATCACTGAGAGGTGCTTGCATAAACAAGGAACGGAACGACCAAACATGGGCGAAGTGGAGATACAACTTGAGCTTGCGCTTCAATTGCAGGAGAAAGCAGAAACCTAG 999 0.4084 MGLLSLLSCFSKPEAGVNRLLVTTTFNIMGEHCHHFSLAEIQSSLTNVKESLVIGEDSFGVVYKGFLNKGATTVAIKCFNKGSLSGLSESQLKNEVLFLCQLHHPNIMPVIGFCIERFPHLILVHEYMFNGSLNDHLHLTNNHKFVPLSWERRLRICIGVARGLHYLHTGGKCSVIHNFFKTQYILLDQNWEPKISGLLLSKRGSVDVASSFLVARNHDTFAYCDPEYAASGILTVKSNVFSFGVVLLEVVSAKQARDLYLERVKNPNYSVELHAEKIVDPFIKSKIAPDCWKTFIDITERCLHKQGTERPNMGEVEIQLELALQLQEKAET 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00434 332 Gene3D Transferase(Phosphotransferase) domain 1 128 332 - -
Viun5g00434 332 Pfam Protein tyrosine and serine/threonine kinase 53 317 IPR001245 GO:0004672|GO:0006468
Viun5g00434 332 PANTHER OS07G0166700 PROTEIN 32 327 IPR045272 GO:0004714|GO:0006468
Viun5g00434 332 ProSiteProfiles Protein kinase domain profile. 48 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00434 332 Gene3D Phosphorylase Kinase; domain 1 33 127 - -
Viun5g00434 332 SUPERFAMILY Protein kinase-like (PK-like) 23 317 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00434 Viun-Chr5 2509273 2510271 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00434 33 331 Receptor kinase-like Gene Family AT3G51550 44.118 4.65e-71 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Viun5g00434 PK_Tyr_Ser-Thr 7.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00434 - - pvu:PHAVU_008G031100g 525.398