LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g00431	CAAAAATATCATAATCCTTACAAGAATTTGTTTATTTATCTTGTTCAAACTCTTTGTTTAGCCACTGTGTGGTGCTTTCTCTACAGCTTATCGATGGACACAACCTGCAAACAAAGTGCTTTAGGAACCATACTCCTCCTCTTCCTGTTGTGGTGCCTCCCCTGCCTTTCCATAGCAGATGTTATCTATCATCCTCTTGATCTCTTCTCAATCAGCTGTGGCTCTTCTACCAACTTCTCCACGCTTGATACTCGGAATTGGACTGCAGACATCAATTTCCTCTCTCAAACCCATCACTCAGTAGCTGCTCGTTCACTCACACCAACTACCATCCAGGGTCCCTACACCGATGCTCGTCTCTCTCACTCCCCATTCACTTACTTATTCCCTCTCACACCAGGCCCCAAGTTCATTCGTTTCTTCTTCTACTCAACTTCATACCAAAACTTTCCTCGCTCCCAAGCCTCTTTCTCAGTCCAAGCAGGCCCCTATACCCTCCTTCAACATTTCAATTCTTCCCTCAACGCCGATGCCGATGATAACCCTAGATACCCTGACATCTTGCTCAGAGAGTATTGCATCAACCCCCAAGATGGTGAGAACCTCAACATAACCTTCATTCCAAGCACCACAGCCCAGCATCCAGATTCCTACGCTTTCATCAATGGAATCGAGATTGTTTCAATGCCCTTTTATCTCTATTACACCAATCCTGACGTGGAAATCGATGAATTGCCCATACCTGCTGACATCAGGCACCCATTCCCCATTGAAAACAGCTTTGCGCTGGAGACAGTGCACAGGTTGAGAGTTGGGGACAAAGATATTCCACCCGCAGAAGACACGGGTATGCTCAGGCACTGGGATCTTGATAAAGATTATGTAACTAGTCCAAGTGTAGAATCTCTTGATATTGACACTAAAACTAAGCTGAACTTCACTGAGAAGACTCCTAACTACACGGCACCAAACGAACTGTACCGATCTTTAAGAAATATGGGGTTCGATGGCCCTGCCAACATGCGGTTCAACCTCACATGGCAGCTTCCGGTTGATTTGGGTTTCACCTACTTGCTAAGGTTACACTTTTGCCAGCTTGACCCAGAGATTCATAGTCCTGGTGACCTCACCTTCTACATCTACATTCAGGATCGGTGCGTTGAAGAGTGGGCTGACGTCCTCAAATGGAGCGGTGAACAGAAGGGTGTACCAGTGGTTAGAGACTACACAGTTTTCGTGCCTCTCAATCAGGACAAAGCAAATCTTTCACTTAAAATGCATCCTAAACCTCAAAGCAAGACCTGGGACGCACAAATAAATGCAATTGAGCTCTTCAAAATCAACGACTCATCCGCTAATCTCGCTGGACCAAATCCATCCCCTTCTCCAAAAATCTCCGGGGTTCCTATTCAAATTTCAAATAAAAAAAGCAGAGGCACCAAGAGACCCCTAGTTCCCGCTGTCGCCGGTGCAGTTTCTGCTGTCGTTTTACTCTCCTTTATAGTTGCTTTCTTCGTCATCAAACGCAGGCGTAGCGTTGCCATCGACAAGGGTTCCAACAAGAAAGACGGAACTTCTCGCGGGGGTGGCTCATCATCTCTACCAACCAACCTCTGCCGTCACTTCTCAATCGCAGATATTAAGGCCGCCACAAACAACTTCGACGAACTCTTCATCGTTGGAGTGGGAGGCTTTGGCAACGTTTATAAAGGCTACATCGACGGTTCAACACCTGTGGCAATCAAAAGGCTCAAACCGGGATCTCAGCAAGGTCTCGACGAGTTCATGAACGAGATCGAAATGCTCTCTCAACTTCGTCATCTCCATCTTGTTTCCCTTATCGGTTACTGCTACGAGAGCAACGAAATGATACTTGTTTACGATTTCATGGATCGTGGAACCCTCCGTGATCATCTCTACGGAACCGATAACCCTCCGCTCTCATGGAATCGAAGACTTCAAATATGCGTAGGTGCTGCACGAGGACTGCATTATCTGCACACGGGTGCGAAACAGATGATCATTCACCGCGACGTGAAGAGCACAAACATCTTGTTGGATGAAAAATGGGTAGCGAAGGTTTCAGACTTCGGGTTATCAAGAATTGGGCCCACAGGTTCTTCGATGACCCATGTGAGCACTCAGGTGAAGGGCAGTATAGGGTATTTAGACCCGGAGTATTACAAACGGCAGCGTTTGACGGAGAAGTCGGACGTGTACTCGTATGGGGTGGTGCTCTTGGAGGTATTGTGTGGGAGGCAGCCTTTGCTCCGAATGGTGGAGAAGCAACAGGTGTCCCTTGTGGATTGGGCGAAGCATCGGTATCAAAAGGGATCTCTAGGTGAGATTGTGGATCCAGCTCTGAAGGGCCAGATAGCACCTCAAAGTATGCGCAAATTTGGTGAGGTTGCGTTGAGCTGTTTGCTTGAGGATGCGACTCAGCGACCTTCCATGAACGACGTCGTTGGGGTGTTGGAGTTTGTTCTACAGCTTCAGCTTCAGGACAGTGCCCATGTCAATGCTGTGTTGGAAAGTGGTGGGGATTATGAAGACAGCGGTACTGAGAACATGTTTAGCAGTACACATAGCAGTGTGCATGTTTCGGAATATAGTAACAGCAGTGGACTGATCACTACAAGCTACGGGAGTAAGGATTCTGACAGGTTGATCCCAGATCCTGTTTTCTCCGAGATTAAGGATCCGAAGGGACGCTGA	2715	0.4744	QKYHNPYKNLFIYLVQTLCLATVWCFLYSLSMDTTCKQSALGTILLLFLLWCLPCLSIADVIYHPLDLFSISCGSSTNFSTLDTRNWTADINFLSQTHHSVAARSLTPTTIQGPYTDARLSHSPFTYLFPLTPGPKFIRFFFYSTSYQNFPRSQASFSVQAGPYTLLQHFNSSLNADADDNPRYPDILLREYCINPQDGENLNITFIPSTTAQHPDSYAFINGIEIVSMPFYLYYTNPDVEIDELPIPADIRHPFPIENSFALETVHRLRVGDKDIPPAEDTGMLRHWDLDKDYVTSPSVESLDIDTKTKLNFTEKTPNYTAPNELYRSLRNMGFDGPANMRFNLTWQLPVDLGFTYLLRLHFCQLDPEIHSPGDLTFYIYIQDRCVEEWADVLKWSGEQKGVPVVRDYTVFVPLNQDKANLSLKMHPKPQSKTWDAQINAIELFKINDSSANLAGPNPSPSPKISGVPIQISNKKSRGTKRPLVPAVAGAVSAVVLLSFIVAFFVIKRRRSVAIDKGSNKKDGTSRGGGSSSLPTNLCRHFSIADIKAATNNFDELFIVGVGGFGNVYKGYIDGSTPVAIKRLKPGSQQGLDEFMNEIEMLSQLRHLHLVSLIGYCYESNEMILVYDFMDRGTLRDHLYGTDNPPLSWNRRLQICVGAARGLHYLHTGAKQMIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTGSSMTHVSTQVKGSIGYLDPEYYKRQRLTEKSDVYSYGVVLLEVLCGRQPLLRMVEKQQVSLVDWAKHRYQKGSLGEIVDPALKGQIAPQSMRKFGEVALSCLLEDATQRPSMNDVVGVLEFVLQLQLQDSAHVNAVLESGGDYEDSGTENMFSSTHSSVHVSEYSNSSGLITTSYGSKDSDRLIPDPVFSEIKDPKGR	904

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g00431	904	ProSitePatterns	Protein kinases ATP-binding region signature.	560	582	IPR017441	GO:0005524
	Viun5g00431	904	SUPERFAMILY	Protein kinase-like (PK-like)	531	828	IPR011009	-
	Viun5g00431	904	SMART	serkin_6	554	828	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g00431	904	FunFam	receptor-like protein kinase FERONIA	517	629	-	-
	Viun5g00431	904	ProSiteProfiles	Protein kinase domain profile.	554	828	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g00431	904	MobiDBLite	consensus disorder prediction	876	904	-	-
	Viun5g00431	904	FunFam	FERONIA receptor-like kinase	68	230	-	-
	Viun5g00431	904	MobiDBLite	consensus disorder prediction	890	904	-	-
	Viun5g00431	904	Gene3D	-	261	448	-	-
	Viun5g00431	904	Gene3D	-	68	229	-	-
	Viun5g00431	904	Gene3D	Transferase(Phosphotransferase) domain 1	630	845	-	-
	Viun5g00431	904	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	674	686	IPR008271	GO:0004672\|GO:0006468
	Viun5g00431	904	FunFam	Receptor-like protein kinase FERONIA	630	845	-	-
	Viun5g00431	904	Gene3D	Phosphorylase Kinase; domain 1	518	629	-	-
	Viun5g00431	904	FunFam	FERONIA receptor-like kinase	261	448	-	-
	Viun5g00431	904	CDD	STKc_IRAK	560	826	-	-
	Viun5g00431	904	Pfam	Protein tyrosine and serine/threonine kinase	560	823	IPR001245	GO:0004672\|GO:0006468
	Viun5g00431	904	PANTHER	OS03G0124300 PROTEIN-RELATED	45	513	IPR046957	GO:0004672
	Viun5g00431	904	Pfam	Malectin-like domain	71	447	IPR024788	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g00431	Viun-Chr5	2493982	2496843	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g00431	56	904	Receptor kinase-like Gene Family	AT3G51550	45.179	0.0	701

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Viun5g00431		Malectin_like	6.2e-36	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g00431	-		-	vun:114186088	1818.13