Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00428 ATGGACACAACTTGCACTGAAACACCTTTAAGAACCATCCTCCACCTCCTCTTCCAGATATGGTTCTTCTCTTTCATTTCCATGGCAGACGTTATTTATCATCCCACTGACCTCTTTAGCATCAGCTGTGGCTCATCCACCAACTTCTCCACTCTCGACACTCGCAATTGGACTTCAGACATCCACTTCCTCTCTCCAACCCACCTCTCAGTTTCTGCTCCTTCACTCACACCATCTACCATCCAGGGTCCCTACACCCATGCTCGTCTCTCTCACTCTCCATTCTCTTACTCATTCCCTCTCACACCAGGCCCCAAGTTCATTCGTCTCTTCTTCTACTCAACTTCTTACCAAAACTTCCCTTGCTCCCAAGCCTCTTTCTCAGTCCAAGCAGGCCCCTACACCCTCCTTCAACATTTCAACGCTTCCCTCAACGCCGATGCTGAAGATGATCCTAGCCACCCTGACATCTTGTTCAGAGAGTATTGCATCAACCTCCAAGACGGTGAGAACCTCAACATAACCTTCATTCCTACCACCACAGATTCCTACGCTTTCATCAACGGGATCGAGATTGTTTCGATGCCCACTTATCTCTACTACACCGATCCTCACGACTCCACAGAACAGCCGCAATATGTTGGCACCATGACCCCATATGTCGTTGAGAACAAGTTTGCTCTCGAGACCATGTACAGGTTAAAAGCTGGTGATCATACTATACCCTCCTCTGAGGATACGGGTATGCTCAGGACTTGGGATACCGATAGCAAGTACCTAGATACTCAAAGTGAAGAATCTATTGAGTTTACGGGCACAACTAAGCTGAGCTTCACTAAGATTCCTAACTACACGGCACCAGAACAAGTTTTTCGATCTGTAAGGAATATGGGAAGGGATGCCTCTTTCAATAAGATGAACAACATCTCCTGGCAGCTTTCCGTTGATTCCGGCTTCACCTACTTGCTAAGGTTATACTTTTGTGAGCTTAACCCGAGAATTGAAGAGCCTGGTGTCCTGAGATTCTTCATCTTCATACAAGATCAGTTGGCTACGGATTGGGCAGACGTTTTCATGTGGACAAATCATTGGGGTGTGCCCGTGGTTAGAGAGTATGTAGTTATCATCTCAGAGAGTCCGAAAAAAGTTAACCTTTCGCTAAAAATGCATCCTCACCCTAAAAGCATAATCCAGGACGCTCAAATAAACTCAATTGAAATCTTCAAAATCAGCAATTATAAACGTAGTCTCGCTGGACCGAATCCGGACCCTCCTCAAACCGCAGTGGTATCCCATCAAGGCTCAAATAAGAAAAACGGAGCCACCAAGAAAACCCTCGCGGCTGTGACAGGGACAGTTTTCGGTGTCCTTTTGCTCTCTTCTATTGTCGCTTTCTTCTTCGTCAAACGCAAGAAAAACATCACCGTTAAAAGTACGAAAGAGGGAACTTCTCCTCTCCGGGATGGCTCACCATCGCTTCCAACCAACCTCTGTCGTCACTTCTCAATCTCAGAAATCATTACCGCCACCAATAACTTCGACGAACTCTTCATCGTTGGAGTGGGAGGCTTTGGCAACGTTTACAAAGGCTACATCGACGATTCAACACCTGTGGCAATCAAAAGGCTCAAACCGGGTTCTCAGCAAGGTCTCGACGAGTTCATGAACGAGATCGAAATGCTGTCTCAACTTCGTCATCTCCATCTTGTTTCCCTCATCGGTTACTGCTACGAGAGCAACGAGATGATCCTCGTGTACGATTTCATGGATCGTGGAGCCCTTCGTGATCATCTCTACGACACCGATAACCCTTTGCTTTCATGGAAGCAAAGGCTTCAGATATGCATCGGGGCAGCACGAGGACTGCATTATCTGCATACAGGTGCGAACCAGATGATCATTCACCGTGACGTGAAGAGCACAAACATCTTGTTGGATGAAAAATGGGTGGCGAAAGTTTCAGACTTCGGGTTATCTCGAATTGGGCCCACGGGTTCTTCAATGACCCATGTGAGCACTCAGGTGAAAGGCAGTGTTGGGTATTTAGACCCGGAGTATTACAAACGACAGCGTTTGACGGAGAAGTCGGACGTTTACTCGTATGGAGTGGTGCTCTTAGAGGTATTGTGTGGGAGGCAGCCTTTGCTCCGAACGGTGGAGAAGCAACAGGTGTCACTTGTGGATTGGGCGAAGCATCGGTATGAGAAGGGATCTCTGGGTGAGATTGTGGATCCAGCACTGAAGGGTCAGATAGCACCTCAGTGTTTGCGCAAATTTGGTGAGGTTGCGTTGAGCTGTTTGCTTGAGGATGGGACTCAGCGACCTTCAATGCACGACGTCGTTGGGGTGTTAGAGTTTGTTCTGCAGCTTCAGCTTCAGGATAGTGCTCATGGTGATGTAGTGTGGGAGAGTGGTGGGGATTATGAAGGCAGTACAACTGAGGAGATATTTAGCGGTTCCCATAGTAACAGTAGTGGATTAAACTCTACAAGCTACGGGAATAAGGAATCTGACAGGTTGATCCCTGAGAATGTTTTTTCTGATCTTAAGGATCCAAAGGGACGCTGA 2568 0.4735 MDTTCTETPLRTILHLLFQIWFFSFISMADVIYHPTDLFSISCGSSTNFSTLDTRNWTSDIHFLSPTHLSVSAPSLTPSTIQGPYTHARLSHSPFSYSFPLTPGPKFIRLFFYSTSYQNFPCSQASFSVQAGPYTLLQHFNASLNADAEDDPSHPDILFREYCINLQDGENLNITFIPTTTDSYAFINGIEIVSMPTYLYYTDPHDSTEQPQYVGTMTPYVVENKFALETMYRLKAGDHTIPSSEDTGMLRTWDTDSKYLDTQSEESIEFTGTTKLSFTKIPNYTAPEQVFRSVRNMGRDASFNKMNNISWQLSVDSGFTYLLRLYFCELNPRIEEPGVLRFFIFIQDQLATDWADVFMWTNHWGVPVVREYVVIISESPKKVNLSLKMHPHPKSIIQDAQINSIEIFKISNYKRSLAGPNPDPPQTAVVSHQGSNKKNGATKKTLAAVTGTVFGVLLLSSIVAFFFVKRKKNITVKSTKEGTSPLRDGSPSLPTNLCRHFSISEIITATNNFDELFIVGVGGFGNVYKGYIDDSTPVAIKRLKPGSQQGLDEFMNEIEMLSQLRHLHLVSLIGYCYESNEMILVYDFMDRGALRDHLYDTDNPLLSWKQRLQICIGAARGLHYLHTGANQMIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTGSSMTHVSTQVKGSVGYLDPEYYKRQRLTEKSDVYSYGVVLLEVLCGRQPLLRTVEKQQVSLVDWAKHRYEKGSLGEIVDPALKGQIAPQCLRKFGEVALSCLLEDGTQRPSMHDVVGVLEFVLQLQLQDSAHGDVVWESGGDYEGSTTEEIFSGSHSNSSGLNSTSYGNKESDRLIPENVFSDLKDPKGR 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00428 855 SMART serkin_6 513 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00428 855 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Viun5g00428 855 SUPERFAMILY Protein kinase-like (PK-like) 488 787 IPR011009 -
Viun5g00428 855 MobiDBLite consensus disorder prediction 419 440 - -
Viun5g00428 855 MobiDBLite consensus disorder prediction 812 855 - -
Viun5g00428 855 Gene3D Transferase(Phosphotransferase) domain 1 589 800 - -
Viun5g00428 855 FunFam receptor-like protein kinase FERONIA 475 588 - -
Viun5g00428 855 FunFam FERONIA receptor-like kinase 38 196 - -
Viun5g00428 855 Gene3D Phosphorylase Kinase; domain 1 476 588 - -
Viun5g00428 855 CDD STKc_IRAK 519 785 - -
Viun5g00428 855 MobiDBLite consensus disorder prediction 812 837 - -
Viun5g00428 855 FunFam Receptor-like protein kinase FERONIA 589 804 - -
Viun5g00428 855 Pfam Malectin-like domain 41 410 IPR024788 -
Viun5g00428 855 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524
Viun5g00428 855 FunFam FERONIA receptor-like kinase 226 411 - -
Viun5g00428 855 MobiDBLite consensus disorder prediction 841 855 - -
Viun5g00428 855 Pfam Protein tyrosine and serine/threonine kinase 519 782 IPR001245 GO:0004672|GO:0006468
Viun5g00428 855 ProSiteProfiles Protein kinase domain profile. 513 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00428 855 Gene3D - 37 196 - -
Viun5g00428 855 Gene3D - 226 411 - -
Viun5g00428 855 MobiDBLite consensus disorder prediction 426 440 - -
Viun5g00428 855 PANTHER OS03G0124300 PROTEIN-RELATED 15 473 IPR046957 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00428 Viun-Chr5 2448267 2451124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00428 24 855 Receptor kinase-like Gene Family AT3G51550 45.383 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Viun5g00428 Malectin_like 4e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00428 - - vun:114186088 1248.8