Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00427 ATGGAAACAACTACCAAACCAATAGCTCTGGGAACCATCCTTCTCCTACTGTTGTTGAGTTTCTCTCATCTTTCCAAAGCAGATGTTATTTTTGATCCCCCTGACCTACTCACTATCAACTGTGGCTCTTCCACCAACTTCTCCACGCCCGAAGGTCGGAACTGGATTGGAGACACCAACACAAAGCTTCTCGCTGTAAGCCGGGGCTCACTTATTGCTACTGCAGTCACAAAGACAACCATACAGGGTCCTTACGACTCTGCTCGCCTCTCCTTCTCCAATTTCACTTACTCAACATTCAATCTCACTGCTGGCCCAAAGTTCCTTCGCCTCTTCTTCTTCTCCACTTCATACAACAACAACTTTAATCGCTCCAAAGCCGTTTTCTCGGTCAAAGCAGGCCCATACACTCTCCTTCAACATTTCAATGCTTCCCTCAACGCCGATGCTGATGATGACCCTGCTCGCTCCAACATCCTATTCAGAGAGTATTGCATCAATCTCCAAGAAGGACAAAACCTCAACATAACCTTCATTCCAAGCTCCACGGGTTCCTACGCTTTCATCAATGGAATCGAGATTGTTTCAATGCCCTCTTATCTCTACTATACCGATCCTAACGTCGACATCGGTGGATTGCCGAAACTTGTTGGAGGACAAACATATACAATTGAAAATAATTTGGCTCTGGAAATGAAGTACAGGTTAAGATTTGGGGACCGAAGTATCCCCGCCTCGGAGGACACGGGTATGCTCAGGACATGGGATGTTCATAATCAATATATTACTACTCAAAGTGTAGAATCTCTTGATTTTGGCAATAAAACCAAGCTGATCTTTAGTAAGACTCCTAATTACACTGCACCAGACCAGGTATACCTATCACTAGTGAATATGGGACCTAATGCCTCCATCAACATGGGGTTCAACCTCACATGGCAGCTTCCTGTTGATCCTGGTTTCACCTACATGCTACGGTTACACTTTTGCCAGCTTGACCCGGAAGTTATTGGGTCTGGTGACCAGATCTTCCTCATCTACATTCGGGATGATTTGGTTGAAGACTTTGTAGACATTTTCTCTTGGGGCGGTAAGCAGAGGGGTGTACCAGTGGTTAGAGACTACGCAGTCATCATCAACGCCTCAGATAATCAGAAAAAGACATATCTTTCTGTGAAATTGCACCCTCACGATAAAAGCTTGATCAAGGACGCACAACTAAACGCAATTGAACTCTTCAAAATCAGCGACCCAACAGGTAATCTCGCTGTACCTGGCTCAGACCCTCCTCCACAGACCGTTCAAATATCAAAAAATAAAAACAACAGCACCACCAGAATCCCTGCCGCCGTTGCGGGGGCAGTTTCGGGTGTCCTTTTGTTCTCCTTTATTGTCGCTTTTTTCCTCATCAAACGCAGGAAGAGCGTCTCTGTCAGCAAGTGTCCCAATAAAAAAGACGGAACTTCTCTGGGCAGTGGCTCATCATCGCTACCAACCCACCTCTGCCGTCACTTCTCAGTCGCAGAAATCAGAGCAGCAACCAATAACTTCGACGAACAAATGGTGGTTGGCGTGGGAGGCTTCGGCAACGTGTACAAAGGCTATATTGACGACGGTTCAACATGTGTTGCAGTTAAAAGGCTCAAACGAGGTTCTCGGCAAGGTATTAACGAGTTTATGAACGAGATCGAAATGCTTTCTCAACTACGTCATCTCCATCTTGTTTCCCTCATCGGTTACTGCTACGAGAACAATGAGATGATACTCGTTTACGATTTTATGGAACGTGGAACCCTCCGTGACCATCTTTACGGAGCCGATAACCAGTCCCTGCCGTGGGAGCAAAGGGTCGAAATATGCATAGGTGTAGCAAGAGGATTGCATTATCTGCATACAGGTGTGAAGCAGGTGATCATTCACCGTGACGTGAAGACCACCAATATCTTGTTGGATGAAAAATGGATGGCCAAGGTTTCAGACTTCGGTTTATCCAGAATTGGGCCCACAGGTATTTCGATGTCCCATGTGAACACTCAGGTGAAAGGTAGCATAGGATACTTAGACCCGGAGTACTACAAACGACAGCGTTTGACGGAGAAGTCTGACGTGTACTCGTTTGGGGTAGTGCTCTTGGAGGTATTGTGTGGGAGACAACCTTTGATCCACTGGGAGGAGAAGCAACGGATATCAGTTGTTAAATGGGCGAAGCATTGCTATGAGAAGGGATGTCTGGGTGAGGTTGTGGATCCCACAGTGAAGGGTCAGACAACAGCTCAGTGTTTGCAAAAATTTGGTGAGATTGCTCTGAGCTGCTTGCAGGAGGATGGGACTGAGAGGCCCTCCATGAAGGACGTGGTTGGGATGCTCCAGTGTGTTCTGCAACTTCACTATAGTGGTGTTGGTGAGGACGTGTCGGGCAGTGGTGTGTTTAGCCAACTCGATGCAGATTATAGTAACAACACCACAAGCGACGGAGATAGCAGCTGGACGAGAAATGAATCTTCTGTGTTAATCCCTGATGATGTTTTCTCAGAGATTAAGGATCCTAAGGGACGATGA 2559 0.4658 METTTKPIALGTILLLLLLSFSHLSKADVIFDPPDLLTINCGSSTNFSTPEGRNWIGDTNTKLLAVSRGSLIATAVTKTTIQGPYDSARLSFSNFTYSTFNLTAGPKFLRLFFFSTSYNNNFNRSKAVFSVKAGPYTLLQHFNASLNADADDDPARSNILFREYCINLQEGQNLNITFIPSSTGSYAFINGIEIVSMPSYLYYTDPNVDIGGLPKLVGGQTYTIENNLALEMKYRLRFGDRSIPASEDTGMLRTWDVHNQYITTQSVESLDFGNKTKLIFSKTPNYTAPDQVYLSLVNMGPNASINMGFNLTWQLPVDPGFTYMLRLHFCQLDPEVIGSGDQIFLIYIRDDLVEDFVDIFSWGGKQRGVPVVRDYAVIINASDNQKKTYLSVKLHPHDKSLIKDAQLNAIELFKISDPTGNLAVPGSDPPPQTVQISKNKNNSTTRIPAAVAGAVSGVLLFSFIVAFFLIKRRKSVSVSKCPNKKDGTSLGSGSSSLPTHLCRHFSVAEIRAATNNFDEQMVVGVGGFGNVYKGYIDDGSTCVAVKRLKRGSRQGINEFMNEIEMLSQLRHLHLVSLIGYCYENNEMILVYDFMERGTLRDHLYGADNQSLPWEQRVEICIGVARGLHYLHTGVKQVIIHRDVKTTNILLDEKWMAKVSDFGLSRIGPTGISMSHVNTQVKGSIGYLDPEYYKRQRLTEKSDVYSFGVVLLEVLCGRQPLIHWEEKQRISVVKWAKHCYEKGCLGEVVDPTVKGQTTAQCLQKFGEIALSCLQEDGTERPSMKDVVGMLQCVLQLHYSGVGEDVSGSGVFSQLDADYSNNTTSDGDSSWTRNESSVLIPDDVFSEIKDPKGR 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00427 852 SMART serkin_6 517 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00427 852 FunFam receptor-like protein kinase FERONIA 480 593 - -
Viun5g00427 852 FunFam FERONIA receptor-like kinase 228 416 - -
Viun5g00427 852 FunFam FERONIA receptor-like kinase 36 198 - -
Viun5g00427 852 Gene3D Phosphorylase Kinase; domain 1 502 593 - -
Viun5g00427 852 Pfam Malectin-like domain 39 415 IPR024788 -
Viun5g00427 852 Gene3D Transferase(Phosphotransferase) domain 1 594 801 - -
Viun5g00427 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Viun5g00427 852 Pfam Protein tyrosine and serine/threonine kinase 522 788 IPR001245 GO:0004672|GO:0006468
Viun5g00427 852 SUPERFAMILY Protein kinase-like (PK-like) 492 789 IPR011009 -
Viun5g00427 852 FunFam Receptor-like protein kinase FERONIA 594 807 - -
Viun5g00427 852 PANTHER OS03G0124300 PROTEIN-RELATED 12 476 IPR046957 GO:0004672
Viun5g00427 852 CDD STKc_IRAK 532 790 - -
Viun5g00427 852 ProSitePatterns Protein kinases ATP-binding region signature. 523 546 IPR017441 GO:0005524
Viun5g00427 852 ProSiteProfiles Protein kinase domain profile. 517 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00427 852 Gene3D - 228 416 - -
Viun5g00427 852 Gene3D - 36 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00427 Viun-Chr5 2442839 2445659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00427 24 852 Receptor kinase-like Gene Family AT3G51550 43.722 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Viun5g00427 Malectin_like 1.5e-33 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00427 - - gmx:113000103 1098.19