Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00426 ATGGCTCACACAGTGAAGGTGATAGATCAGTGTGAAGTTAGTCCTCCACCAGGTTCTGTTCCTTCAACCTCTCTCCCTCTCACTTTCTTCGATCTTCCATGGCTATGTTGTCCCCCTCTCAAACGTATCTTCTTCTATAACTTCCCTTATTCCACCCAACACTTCTTCCAAACTCTCCTTCCAACTCTCAAGAACTCTCTTTCCCTCACTCTCCAACACTTCTTCCCTTTCTCTTCCAACCTTGTCTTCCCTCCAAAGCCAAACCCCCCTCACATCCTCTTTACACAACCTAATTCTCTCTCCTTCACAGTTGCTGAGTCCTCAGCAGATTTCACCACCCTTGTCTCCGATTCCCCAAAAAATGTCACAGCTTTGCACCCTTTTGTCCCTGTCTTGCCCCCACCACAAACCTTAGAAGATGGCACTTTTTTGATCCCTCTCATGTCCATTCAGGTCACTGTTATGCCCCATTCTGGCTTCGCCATATGCATCACTTTCAGACACGCGGCTGCTGATGGAAGAGCTTTTCATCACTTCATGAAATTCTGGGCCTCTGTTTGTAAGTCCAACGGAGACTTGACTTTGGCTTCCCTTGCTTTGCCATTGCACAACAGGGACATCATTCAAGACCCGAAAGGTCTAAAGCACATTTTCTTGCAAGAATTGTTGAACTTTTTACCGGAAAATGTAGAGTCCACGGGTGAAATACGCGATGTTCCTACTGACATGCTGCGTCACACTTTTGTCTTGAGTCATGACCATGTTGAGAAACTCAAGAAATGGGTGTCTGTTAAATGCAAAAGTCATGGTCTAGAATTACCACACTTAACAACCTTTGTGGTGACATGTTCTCTGATTTGGGTTTGTAAGGTGAAATCAGAAGAGATTAAGGCTGGTACTGTGCTTTTCAATAATGATGAGTCCTACATCTTGGCCTTTATGGCAGATTGCCGTAATCGTCCTGAATTTTCAATTCCATTGGAATACTTTGGAAATTGTTTGGTTTGTGGCAATGCTGAAGTCAAGAGGAGCAAGCTTGCTGGAGGAAATGGTATTTTGGAGGCAGCCATCGCTATTGGTAGTGAAGTTAGACATTTGCAACGACGAACATTTGAAGGGGCTGAAACATTGATGTCAAATTTTACTGAATTTGCCACGTTGGGGAAGCACATGACAATAATTGCAGGGTCACCAAGTCTGAAAGCGTATGAAACTGACTTCGGGTGGGGAAAGCCCGAGAAGAGTGAAGTGGTTCAGGTAGATAATTCTGGATCAATTTCCCTTTCTGACTGCAGGGACAAAGAAGGTCGAATTGAAGTTGGGTTAGCACTTCAAAAGATTCAAATGAAGAAATTCAGTACCATTTTGGAAGAGCACCTCACAGAAATTAGTGTTCTTGACTGA 1404 0.4402 MAHTVKVIDQCEVSPPPGSVPSTSLPLTFFDLPWLCCPPLKRIFFYNFPYSTQHFFQTLLPTLKNSLSLTLQHFFPFSSNLVFPPKPNPPHILFTQPNSLSFTVAESSADFTTLVSDSPKNVTALHPFVPVLPPPQTLEDGTFLIPLMSIQVTVMPHSGFAICITFRHAAADGRAFHHFMKFWASVCKSNGDLTLASLALPLHNRDIIQDPKGLKHIFLQELLNFLPENVESTGEIRDVPTDMLRHTFVLSHDHVEKLKKWVSVKCKSHGLELPHLTTFVVTCSLIWVCKVKSEEIKAGTVLFNNDESYILAFMADCRNRPEFSIPLEYFGNCLVCGNAEVKRSKLAGGNGILEAAIAIGSEVRHLQRRTFEGAETLMSNFTEFATLGKHMTIIAGSPSLKAYETDFGWGKPEKSEVVQVDNSGSISLSDCRDKEGRIEVGLALQKIQMKKFSTILEEHLTEISVLD 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00426 467 Pfam Transferase family 18 455 - -
Viun5g00426 467 PANTHER - 5 460 - -
Viun5g00426 467 Gene3D - 4 232 IPR023213 -
Viun5g00426 467 Gene3D - 239 462 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00426 Viun-Chr5 2435334 2436989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00426 43 458 Monolignol Biosynthesis Gene Families AT5G48930 22.603 2.55e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00426 - - gmx:100782335 829.32