Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00425 ATGGCCCAGTCCTTCGGTCAGACCGAGATTAACTGGGACAAGCTAGATAAAACTAGGTTCTATGTCGTAGGAGCTGGACTCTTTACAGGTGTTTCGGTAGCACTTTACCCCATTTCGGTCGTGAAAACCAGGCTGCAGGTTGCCGCAAAGGATGCTGTTGAGAGAAGTGTGTTTTCTGTTGTGAAAGGACTACTTAAAAGAGATGGCGTCCCTGGTCTGTATAGAGGGTTTGGCACAGTTATCACTGGTGCTATTCCTGCCAGAATAATTTTCCTCTCCACTCTAGAGACCACAAAGGTGGCTGCCTTCAGAATGCTTGAACCGTTTCGACTATCTGAAACTACCAAAGCTGCCATTGCAAATGGAGTTGCAGGCATGACATCATCGATTTTTGCTCAATCTGTGTTTGTACCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCATGCCCAGTATAGCGGGGGTTTTGATGTTGCTCGCAAGGTTTTAAGATCTGATGGCATCCGGGGATTGTATAGAGGGTTTGGTCTGTCTGTTATGACTTATTCACCTTCTAGTGCAGTATGGTGGGCAAGTTATGGTTCAAGCCAACGCGTCATTTGGAGATTCCTGGATCATGATACCGAATATGATGAACACACTCCTAGTCTGCAGAAAATAATGTTAGTTCAGGCTACCGGAGGGATTATTGCTGGTGCATCTTCATCCTGCATTACAACCCCATTGGATACTATCAAGACACGATTACAGGTAATGGGTCATGAAAATAGAATCTCTATAAAACAAGTTGCGAAAGATTTAATGAACGAAGATGGTTGGAAAGGCTTTTATAGAGGGTTTGGCCCAAGATTCTTTAGCATGTCAGCGTGGGGCACTTCAATGATATTGACTTATGAGTATCTGAAACGCGTATGCGCAAAAGATGAATAG 945 0.4423 MAQSFGQTEINWDKLDKTRFYVVGAGLFTGVSVALYPISVVKTRLQVAAKDAVERSVFSVVKGLLKRDGVPGLYRGFGTVITGAIPARIIFLSTLETTKVAAFRMLEPFRLSETTKAAIANGVAGMTSSIFAQSVFVPIDVVSQKLMVQGYSGHAQYSGGFDVARKVLRSDGIRGLYRGFGLSVMTYSPSSAVWWASYGSSQRVIWRFLDHDTEYDEHTPSLQKIMLVQATGGIIAGASSSCITTPLDTIKTRLQVMGHENRISIKQVAKDLMNEDGWKGFYRGFGPRFFSMSAWGTSMILTYEYLKRVCAKDE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00425 314 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 313 - -
Viun5g00425 314 Pfam Mitochondrial carrier protein 27 100 IPR018108 -
Viun5g00425 314 Pfam Mitochondrial carrier protein 228 313 IPR018108 -
Viun5g00425 314 Pfam Mitochondrial carrier protein 118 205 IPR018108 -
Viun5g00425 314 SUPERFAMILY Mitochondrial carrier 13 306 IPR023395 -
Viun5g00425 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 309 IPR018108 -
Viun5g00425 314 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Viun5g00425 314 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Viun5g00425 314 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Viun5g00425 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Viun5g00425 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Viun5g00425 314 Gene3D Mitochondrial carrier domain 22 314 IPR023395 -
Viun5g00425 314 FunFam Mitochondrial substrate carrier family protein 21 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00425 Viun-Chr5 2428931 2434287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00425 10 314 Chloroplast and Mitochondria Gene Families AT5G15640 76.221 4.12e-174 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00425 K15121 - gmx:100782750 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00425 5 2428931 2434287 Viun5g00425 5 2428931 2434287 ECH
Viun4g00834 4 6729974 6736656 Viun5g00425 5 2428931 2434287 PCT