Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00424 ATGGCCTTCTCTCTGTTACCAAAGTTATCTCCTTGTATTTTGTTCTTGCTTCTGCTATCTTCAACTTGCTTCACTTCAACAGATGCTTATGATCTGCTTGACCCAAATGGGAATATCACAATCAACTGGGATGTTATGTCATGGACTCCTGATGGATATGTAGCTGTTGTTACAATGAACAACTTCCAAAGATATCGTCATATTACTTTACCTGGCTGGTTTCTAAGGTGGAGATGGGCAGAAAAGGAGGTAATATGGGCCATGATGGGAGCGCAGACCACTGAACAAGGAGATTGTTCAAAATTTAAGGGAGGTATTCCACATTCTTGTAAGAAGGATCCGACAGTTGTGGATTTGCTTCCTGGAACACCATACAATCAACAAATTGCAAATTGCTGCAAAGGTGGGGTGCTTAGTTCATCGGTGCAGGATCCAAGCAGAGCAGCAGCAGCTTTTCAAGTTAGTGTTGGTAGAGCTGGAACCACAAACAAAACTGTCAAAGTCCCGAAAAACTTCACCTTGGAAGCACCTGGACCACGTTATACTTGTGCACCAGCTAAGATTGTCAGACCCACTCAATTCATTACTCCAGACAAAAGGAGATTCACCCAAGCATTGATGACATGGCAGGTGGTATGCACATACTCACAATTTCTAACTCAGAAAACTCCCACTTGCTGCGTCTCACTTTCATCTTTCCATAATAATACTATTGTGCCTTGCCCAACATGTTCATGTGGCTGCCGAAGTAACTCATCTCAGTCAGGGAAATGTGTAAATCCAGGTACACCACATTTGGCCTCATTCGTTTCTGGCTTCGGGAAGAACGAATTTTCACCTACGGTTGAATGTACCAATCACATGTGTCCGATCAGAGTCCACTGGCATGTTAAGTTCAACTCAGAGAAGTACTGGCATGTGAAGGTTACTATTACTAATTTGAATTACGGGATGAATTATTCTGACTGGAACTTAGCCATTCAACACCCAAACTTCGACCATCGGACTCAAGTGTCCGGTTTCATCTACAAGCTCATGACTCCTTATGCTTCAATAAATGATACAGCAATGTTGTGGGGAATGAAGTCCCAGCGTAATGATGTTCTGATCCAAGCTGGCCCGAATGGAAAGGTTGAAGGAGATGTTCTCTTCCGAAAGGATAAAGCAACTTTAATTGATAAGGGATGGGCTTTCCCCCGAAGGATCTACTTCAATGGTGACACTTGTACTATGCCACCACCCAGTGCTTACCCCTTTTAG 1260 0.4333 MAFSLLPKLSPCILFLLLLSSTCFTSTDAYDLLDPNGNITINWDVMSWTPDGYVAVVTMNNFQRYRHITLPGWFLRWRWAEKEVIWAMMGAQTTEQGDCSKFKGGIPHSCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSSVQDPSRAAAAFQVSVGRAGTTNKTVKVPKNFTLEAPGPRYTCAPAKIVRPTQFITPDKRRFTQALMTWQVVCTYSQFLTQKTPTCCVSLSSFHNNTIVPCPTCSCGCRSNSSQSGKCVNPGTPHLASFVSGFGKNEFSPTVECTNHMCPIRVHWHVKFNSEKYWHVKVTITNLNYGMNYSDWNLAIQHPNFDHRTQVSGFIYKLMTPYASINDTAMLWGMKSQRNDVLIQAGPNGKVEGDVLFRKDKATLIDKGWAFPRRIYFNGDTCTMPPPSAYPF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00424 419 PANTHER PROTEIN COBRA 18 419 IPR006918 GO:0010215|GO:0016020
Viun5g00424 419 PIRSF COBRA 2 419 IPR006918 GO:0010215|GO:0016020
Viun5g00424 419 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00424 Viun-Chr5 2422994 2425772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00424 4 419 COBRA Gene Family AT3G02210 66.507 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00424 - - gmx:100783820 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00424 5 2422994 2425772 Viun5g00424 5 2422994 2425772 ECH
Viun4g00837 4 6754940 6757548 Viun5g00424 5 2422994 2425772 PCT
Viun5g00424 5 2422994 2425772 Viun4g00836 4 6749602 6754597 PCT