Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00417 ATGTTTCTCAATTGTTTGGGTAGGAGTTGTTGGAAGCACACAACGAATACAAATTCAGCTCAGAGACAGTTTCCAACGGTGATAGAAGAGCTGTGCCATCAATTTTCTCTCGCCGATCTAAGGAAAGCCACCAATAACTTCGATCTAAACAGAGTAATAGGGAGTGGAATATTCAGTGAAGTATATAAAGGCTATCTACAGCATAATGGTGCTTCTGATTACACGGTCGCAATAAAGCGATTTAACAATCAAGGATGCGAAGCGTTTAACAACGAAATAGAATTGTTATGCCAGCTTCGCCACCCCAGATGTGTGTCTCTTATAGGATTCTGCAACCACGAAAAGGAGAAGATTCTTGTATACGAGTACATGTCCAATGGATCTCTAAATGAACACCTACAACATGGTGAACTCTCATGGAAGAAGAGGCTACAAATATGCATAGGAGTAGCACGTGGACTACACTACCTTCACACCGGAGCGAAACGTTCGATCTTTCACTGTATCCTGGGTCCTAATACCATCCTTTTGGATGACCACATGGAGCCAAAACTCGCTGGTTTCGGTGTTAGCGTGCAGGGATCACGTTTTATGTCAAAGCAGAAGCAAATCAATGTAGAGCATGTTATGGGTACTTGGGGTGTCATGGCTACGCAGTTTGTCATGGATAGTACCATCACAGCTAAATGGGATGTTTTCTCATTTGGTTTGGTTCTACTCGAAGTTGTGTGCAGGGGGAGGTTTTATTTAATAACCCTGGCTGAAAAAGAATTTCTGGAGAATCCTATTGAGGAGAAAATTGATCCGATTATCAAAGGAAAGATTGCACCAGATTATTGGCAAGTCTTTGTAGATGTCATGGTAAATTGCTTGAAGTATGAACCAGATGAGCGACCTGCAATCGGTGAAGTAGAGGTGCAACTTGAGCATGCTCTATCGATGCAGGAACAAGCAGATATCACAAACTCCAACTGTGATTATACTTTATTGTCCAAAACCATTATTCCCCTGGGAGTGAAACAGTATGTGATACTGAAGAAATTAAGTGACTAG 1053 0.4179 MFLNCLGRSCWKHTTNTNSAQRQFPTVIEELCHQFSLADLRKATNNFDLNRVIGSGIFSEVYKGYLQHNGASDYTVAIKRFNNQGCEAFNNEIELLCQLRHPRCVSLIGFCNHEKEKILVYEYMSNGSLNEHLQHGELSWKKRLQICIGVARGLHYLHTGAKRSIFHCILGPNTILLDDHMEPKLAGFGVSVQGSRFMSKQKQINVEHVMGTWGVMATQFVMDSTITAKWDVFSFGLVLLEVVCRGRFYLITLAEKEFLENPIEEKIDPIIKGKIAPDYWQVFVDVMVNCLKYEPDERPAIGEVEVQLEHALSMQEQADITNSNCDYTLLSKTIIPLGVKQYVILKKLSD 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00417 350 ProSitePatterns Protein kinases ATP-binding region signature. 53 79 IPR017441 GO:0005524
Viun5g00417 350 ProSiteProfiles Protein kinase domain profile. 47 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00417 350 FunFam Receptor-like protein kinase ANXUR2 12 123 - -
Viun5g00417 350 SUPERFAMILY Protein kinase-like (PK-like) 23 308 IPR011009 -
Viun5g00417 350 Gene3D Phosphorylase Kinase; domain 1 8 123 - -
Viun5g00417 350 Gene3D Transferase(Phosphotransferase) domain 1 124 332 - -
Viun5g00417 350 Pfam Protein tyrosine and serine/threonine kinase 49 307 IPR001245 GO:0004672|GO:0006468
Viun5g00417 350 PANTHER OS07G0166700 PROTEIN 31 315 IPR045272 GO:0004714|GO:0006468
Viun5g00417 350 FunFam Receptor-like protein kinase ANXUR2 124 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00417 Viun-Chr5 2371637 2374856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00417 3 319 Receptor kinase-like Gene Family AT3G51550 38.323 1.01e-65 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Viun5g00417 PK_Tyr_Ser-Thr 5.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00417 - - pvu:PHAVU_008G028600g 532.332