Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00414 ATGTTTCTCAATTGTTTGGGTAGGAGCTGTTGTAAGCACACAACGAATACAAATTCATCTCAGAGACAGTTTCCAACGGTGATAGAAGAGCTGTGCCATAAATTTTCTCTCACCGATCTCAGGAAAGCCACCAATAACTTCGATCCAAACAGAGTAATAGGACGTGGATTATTTAGTGAAGTATATAAAGGCTGTGTACAGCAAAATGGTGCTTCTGATCACACGGTCGCAATAAAGCGATTTAAAGATCAAGGATGGGAAGCGTTCAACAAAGAAATAGAATTACTATGCCAGCTTCGTCACCCCAGATGTGTGTCTCTTATAGGATTCTGCAACCACGAAAATGAGAAGATTCTTGTATACGAGAACATGTCCAATGGATCTCTAGATGAACACCTGCAAGATGCTGACCTATCATGGAAGAAGAGACTAGAGATATGCATAGGAGTAGCAAATGGACTACACTACCTTCACACTGGAGCCAAGCGTTCCATCTTTCACTGTATCCTAGGTCCTAGTACCATCCTTTTGGATGACCACATGGAGCCAAAACTCACTGGTTTCGGTGTCAGTGTTCAGGGATCACGTTTTAAGTCAAAGCAGAAACAAATCAATGTAGAGCATGCTATAGGTTCTTGGATCTACAGGGCCACAGAGTATGTCATGGATGGTACCATCACAGATAAATGGGATGTTTTCTCATTTGGTTTGGTTCTACTACTAGTAGTGCTGTGCAGGAGGACGAATTATTTAAAAACCCTGACTGAAAAAGAACTTCTGAACAAGCCTGTCGAGGAGAACATTGATCCGATTATCAAAGGAAAGATTGCACCAGATTGTTGGCAAGTCTTTGTAGATGTCATGGTAAATTGCCTGAAGTATAAACCAGATGAGCGACCTACAATGGGTGAAGTAGAGGTGCAACTTCAGCATGCTCTATTGATGCAGCAACGAGCAGATATCACAAACTCCAACCGCGATTATACATTATTTTCCAAAACCATTATTCCCATGGGATTGAAAAAGAATGCGATGTAA 1038 0.4143 MFLNCLGRSCCKHTTNTNSSQRQFPTVIEELCHKFSLTDLRKATNNFDPNRVIGRGLFSEVYKGCVQQNGASDHTVAIKRFKDQGWEAFNKEIELLCQLRHPRCVSLIGFCNHENEKILVYENMSNGSLDEHLQDADLSWKKRLEICIGVANGLHYLHTGAKRSIFHCILGPSTILLDDHMEPKLTGFGVSVQGSRFKSKQKQINVEHAIGSWIYRATEYVMDGTITDKWDVFSFGLVLLLVVLCRRTNYLKTLTEKELLNKPVEENIDPIIKGKIAPDCWQVFVDVMVNCLKYKPDERPTMGEVEVQLQHALLMQQRADITNSNRDYTLFSKTIIPMGLKKNAM 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00414 345 ProSitePatterns Protein kinases ATP-binding region signature. 53 79 IPR017441 GO:0005524
Viun5g00414 345 PANTHER OS07G0166700 PROTEIN 31 316 IPR045272 GO:0004714|GO:0006468
Viun5g00414 345 Pfam Protein tyrosine and serine/threonine kinase 50 308 IPR001245 GO:0004672|GO:0006468
Viun5g00414 345 Gene3D Phosphorylase Kinase; domain 1 8 122 - -
Viun5g00414 345 SUPERFAMILY Protein kinase-like (PK-like) 21 308 IPR011009 -
Viun5g00414 345 Gene3D Transferase(Phosphotransferase) domain 1 124 334 - -
Viun5g00414 345 FunFam Receptor-like protein kinase ANXUR2 124 331 - -
Viun5g00414 345 ProSiteProfiles Protein kinase domain profile. 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00414 345 FunFam Receptor-like protein kinase ANXUR2 11 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00414 Viun-Chr5 2369262 2370800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00414 3 320 Receptor kinase-like Gene Family AT3G51550 38.024 6.80e-64 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Viun5g00414 PK_Tyr_Ser-Thr 4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00414 - - pvu:PHAVU_008G028600g 515.383