Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00413 ATGTTTATGAAATGTTTAGGCAGCACAAGTTCTTCAAAGAAACAGTATCTAACTGTAATAGAAGAGTTGTGCCATCAGTTTTCTCTTGCAGAGCTTAGAAAATCAACCAACAACTTCGATAGAAAGAGACTAATTGGACGCGGAGGATTTGGTGAAGTTTATAAAGGCTATCTCCAACATTCTAACTATATAGTTGCAGTGAAGCGGTTTTCTGCGGAACACAGTGAAGTGTTCAAGAATGAAATAGAGTTGCTCTGCCAGCTTCGTCACCCTAATTGTGTGTCTCTCATAGGATTCTGCAACCACAAGAAAGAGAAGATTGTGGTGTACGAGTACATGTCCAATGAATCTCTAGATCGACACCTACAACGTGGGGAACTGTCATGGAAGCAAAGGTTGGAGATTTGCACAGGAGCAGCGCGTGGACTACACTACCTTCATGCAGGAGCTAAGCGCACCATCATTCACCGTATTGTCAAACCTCGAACCATCCTTTTGGACGACAACATGCACCCAAAACTCACAGGTTTCTGCATCAGCGTAAAGGGGTCACGCTTGATGTCAAAACCAAAGCCAATTAAAGTTGATGTTGTGGCAGGTACTCCTGGATACATGGCTAGAGAGCTTTTCACTGACGATGCCATCACAGAGAAATCTGATGTTTATTCTTTTGGTATGGTTCTGCTAGAAGTTGTGTGTGGAAGGAAATACATAACAATGCCAGCTGAAAGAGAATTTCTGGAGAAGCCTGTTGAGGAAAAAGTTGATGCGAGCATCAAGGGAAAGATTGCACCAAAGTGTTGGGAAGTGTTCATAGATATTACCAAAAGATGCGTGATGTATGAACCAGATGAGCGACCAACAATGGGTGAAGTAGAGGTGCAACTAGAGCATGCTTTGTCGTTGCAGGAACAAGCTGATATCACAAATACTAATGGTGATTATACCTTACTTTCCACCACAGTTATTCACCCGGGAGCGGAACTGGTATACAGCACAGAAGACAGTGATACTGAAGAAATGTAA 1026 0.4269 MFMKCLGSTSSSKKQYLTVIEELCHQFSLAELRKSTNNFDRKRLIGRGGFGEVYKGYLQHSNYIVAVKRFSAEHSEVFKNEIELLCQLRHPNCVSLIGFCNHKKEKIVVYEYMSNESLDRHLQRGELSWKQRLEICTGAARGLHYLHAGAKRTIIHRIVKPRTILLDDNMHPKLTGFCISVKGSRLMSKPKPIKVDVVAGTPGYMARELFTDDAITEKSDVYSFGMVLLEVVCGRKYITMPAEREFLEKPVEEKVDASIKGKIAPKCWEVFIDITKRCVMYEPDERPTMGEVEVQLEHALSLQEQADITNTNGDYTLLSTTVIHPGAELVYSTEDSDTEEM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00413 341 Gene3D Phosphorylase Kinase; domain 1 4 112 - -
Viun5g00413 341 FunFam Receptor-like protein kinase ANXUR2 5 112 - -
Viun5g00413 341 FunFam Receptor-like protein kinase ANXUR2 113 318 - -
Viun5g00413 341 Pfam Protein tyrosine and serine/threonine kinase 42 295 IPR001245 GO:0004672|GO:0006468
Viun5g00413 341 ProSiteProfiles Protein kinase domain profile. 39 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00413 341 Gene3D Transferase(Phosphotransferase) domain 1 113 320 - -
Viun5g00413 341 PANTHER OS07G0166700 PROTEIN 23 303 IPR045272 GO:0004714|GO:0006468
Viun5g00413 341 SUPERFAMILY Protein kinase-like (PK-like) 13 296 IPR011009 -
Viun5g00413 341 ProSitePatterns Protein kinases ATP-binding region signature. 45 68 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00413 Viun-Chr5 2366883 2368285 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00413 9 307 Receptor kinase-like Gene Family AT3G51550 42.405 3.34e-73 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Viun5g00413 PK_Tyr_Ser-Thr 2.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00413 - - gmx:100305395 464.536