Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00411 ATGTGTAATAGAAATCGCAGATGTATGTGTAGGATCGTGTGGAAGAGGTTGTTAAAGTGTGAAATCATGGTAGCTATGATGGGTTGCGTAGCAACAGAAAAAGAGTGGAAGAAAGGGCCTTGGACTGGTGAAGAAGACAAGTTGCTAAGTGAATATGTTAGCTTCTATGGTGAAGGTAGGTGGAGTTCAGTGGCAAAGTTTACAGGATTAAATAGGAGTGGCAAAAGCTGCAGGTTAAGATGGGTAAATTATTTGAAACCTGGTCTGAAGAAAGGTCAACTAACACCATTGGAAGAAGGAACCATTATGGAACTACATGCGATTTTGGGTAACAAGTGGTCTACAATAGCAAAGTACTTGCCAGGTAGAACAGATAACGAGATCAAGAACTACTGGAGAACCCACTTCGGGAAGAGGGAGAAATCCAAACACAAGAAGCTACAAAGGCGACAGAAGGAACAACAACAAGAACGACAACCTGAGAAGTGTGATTTCAAAAACATCATGTGCCACAAGGATACCACGAATGAAACAAAATCGTTTGAGACACAAAATAATAAGCTACAAGAAATTGGTTCGATGAACCCAACGATGGATAACCAATACAATAACACCGTTCCTTCCATGCACGAGGGTTTCTCATCCACGTGGCCAGATACTACAGTGGATGATGGGTTATGGTTTGGTTTATGGGACTTTGATGAATCACTGAGTTTTGCAGATTATGTTAACCAGTTCAGCAAATGTGGCATGCCAAATGAAAGCACATTTTATGTTGGAGGGGATTCCACGCTAAGTGATGATAAAACTTGTTGTTTTGATGATGCATATGGCAACCTCTTCTACGGAAAAGACATATTTGGATGA 867 0.4083 MCNRNRRCMCRIVWKRLLKCEIMVAMMGCVATEKEWKKGPWTGEEDKLLSEYVSFYGEGRWSSVAKFTGLNRSGKSCRLRWVNYLKPGLKKGQLTPLEEGTIMELHAILGNKWSTIAKYLPGRTDNEIKNYWRTHFGKREKSKHKKLQRRQKEQQQERQPEKCDFKNIMCHKDTTNETKSFETQNNKLQEIGSMNPTMDNQYNNTVPSMHEGFSSTWPDTTVDDGLWFGLWDFDESLSFADYVNQFSKCGMPNESTFYVGGDSTLSDDKTCCFDDAYGNLFYGKDIFG 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00411 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 140 IPR017930 -
Viun5g00411 288 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 35 208 - -
Viun5g00411 288 CDD SANT 40 85 IPR001005 -
Viun5g00411 288 Gene3D - 37 90 - -
Viun5g00411 288 CDD SANT 95 136 IPR001005 -
Viun5g00411 288 SUPERFAMILY Homeodomain-like 36 132 IPR009057 -
Viun5g00411 288 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Viun5g00411 288 FunFam Myb transcription factor 38 90 - -
Viun5g00411 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 89 IPR017930 -
Viun5g00411 288 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Viun5g00411 288 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Viun5g00411 288 MobiDBLite consensus disorder prediction 139 162 - -
Viun5g00411 288 Gene3D - 93 166 - -
Viun5g00411 288 SMART sant 90 138 IPR001005 -
Viun5g00411 288 SMART sant 37 87 IPR001005 -
Viun5g00411 288 ProSiteProfiles Myb-like domain profile. 33 85 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00411 Viun-Chr5 2349944 2351210 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00411 37 235 MYB Transcription Factor Family AT3G30210 48.402 1.44e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g00411 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00411 K09422 - gmx:100785540 386.341