Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00410 ATGTGTAATAGAAATCGCAGATGTATGTGTAGGATCGTGTGGAAGAGGTTGTTAAAGTGTGAAATCATGGTAGCTATGATGGGTTGCGTAGCAACAGAAAAAGAGTGGAAGAAAGGGCCTTGGACTGGTGAAGAAGACAAGTTGCTAAGTGAATATGTTAGCTTCTATGGTGAAGGATTAAATAGGAGTGGCAAAAGCTGCAGGTTAAGATGGGTAAATTATTTGAAACCTGGTCTGAAGAAAGGTCAACTAACACCATTGGAAGAAGGAACCATTATGGAACTACATGCGATTTTGGGTAACAAGTGGTCTACAATAGCAAAGTACTTGCCAGGTAGAACAGATAACGAGATCAAGAACTACTGGAGAACCCACTTCGGGAAGAGGGAGAAATCCAAACACAAGAAGCTACAAAGGCGACAGAAGGAACAACAACAAGAACGACAACCTGAGAAGTGTGATTTCAAAAACATCATGTGCCACAAGGATACCACGAATGAAACAAAATCGTTTGAGACACAAAATAATAAGCTACAAGAAATTGGTTCGATGAACCCAACGATGGATAACCAATACAATAACACCGTTCCTTCCATGCACGAGGGTTTCTCATCCACGTGGCCAGATACTACAGTGGATGATGGGTTATGGTTTGGTTTATGGGACTTTGATGAATCACTGAGTTTTGCAGATTATGTTAACCAGTTCAGCAAATGTGGCATGCCAAATGAAAGCACATTTTATGTTGGAGGGGATTCCACGCTAAGTGATGATAAAACTTGTTGTTTTGATGATGCATATGGCAACCTCTTCTACGGAAAAGACATATTTGGATGA 837 0.4062 MCNRNRRCMCRIVWKRLLKCEIMVAMMGCVATEKEWKKGPWTGEEDKLLSEYVSFYGEGLNRSGKSCRLRWVNYLKPGLKKGQLTPLEEGTIMELHAILGNKWSTIAKYLPGRTDNEIKNYWRTHFGKREKSKHKKLQRRQKEQQQERQPEKCDFKNIMCHKDTTNETKSFETQNNKLQEIGSMNPTMDNQYNNTVPSMHEGFSSTWPDTTVDDGLWFGLWDFDESLSFADYVNQFSKCGMPNESTFYVGGDSTLSDDKTCCFDDAYGNLFYGKDIFG 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00410 278 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 35 198 - -
Viun5g00410 278 Pfam Myb-like DNA-binding domain 82 125 IPR001005 -
Viun5g00410 278 Pfam Myb-like DNA-binding domain 38 75 IPR001005 -
Viun5g00410 278 SUPERFAMILY Homeodomain-like 36 122 IPR009057 -
Viun5g00410 278 MobiDBLite consensus disorder prediction 129 152 - -
Viun5g00410 278 Gene3D - 37 80 - -
Viun5g00410 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Viun5g00410 278 CDD SANT 85 126 IPR001005 -
Viun5g00410 278 ProSiteProfiles Myb-like domain profile. 33 126 IPR001005 -
Viun5g00410 278 Gene3D - 83 156 - -
Viun5g00410 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 75 IPR017930 -
Viun5g00410 278 SMART sant 80 128 IPR001005 -
Viun5g00410 278 SMART sant 37 77 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00410 Viun-Chr5 2349944 2351217 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00410 37 225 MYB Transcription Factor Family AT3G30210 45.205 4.02e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g00410 Myb_DNA-binding 4.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00410 K09422 - gmx:100785540 357.451