Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00409 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTAACCTTTGCAAAGAGGAGAAATGGTCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGCAGCAGCACTAGCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGAGCAGTGGAAGTTAGCAAACCTGCTAAAGAGCTTGAGAGCAGCTACCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCACTTCAAAGGACCCAAAGAAACCTTCTAGGGGAAGACTTGGGTCCACTGAATACCAAAGAACTTGAGCAGCTTGAACGGCAATTGGATTCTTCTCTAAAGCAAGTGAGGTCCACCAAGACACAATTCATGCTGGATCAGTTGGCTGATCTTCAAAACAAGGAGCAGATGTTGGTAGAAGCAAACAGATCCTTGACAATGAAGCTGGAAGAAATAAACTCAAGAAATCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCAATATGGTGGGCCACAGAATTCTCAGTCTCAGGGCTTCTTCCAGCCACTGGAATGCAATCCCACTTTGCAGATTGGTCCTGATTACAGGTACAATGTTGTCGCTTCAGATCAGATAACTGCAACAACTCCAGCCCAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTTTGA 747 0.4485 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLERYQKCSYGAVEVSKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLTMKLEEINSRNHYRQSWEAGDQSMQYGGPQNSQSQGFFQPLECNPTLQIGPDYRYNVVASDQITATTPAQQVSGFIPGWML 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00409 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Viun5g00409 248 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Viun5g00409 248 FunFam MADS-box transcription factor 1 13 87 - -
Viun5g00409 248 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun5g00409 248 Coils Coil 124 144 - -
Viun5g00409 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun5g00409 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Viun5g00409 248 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Viun5g00409 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun5g00409 248 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun5g00409 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun5g00409 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun5g00409 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun5g00409 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun5g00409 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00409 Viun-Chr5 2338979 2344611 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00409 1 248 MADS-box Gene Family AT5G15800 74.144 2.25e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun5g00409 K-box 7.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00409 K09264 - gmx:100788427 457.218