Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00407 ATGGGAAGGGGTAGGGTTCAGCTCAAACGGATCGAGAACAAAACAAGCCAGCAAGTCACCTTTTCCAAACGCAGAACGGGACTTCTCAAGAAAGCCAACGAAATCTCTGTTCTCTGTGATGCTCAAGTCGCTCTCATTATGTTCTCTACCAAAGGCAAACTTTTCGAGTATTCCTCCGAACGCAGCATGGAAGATGTCTTGGAACGTTACGAGAGATATACTCATACAGCACTTACTGGAACCAACAATGACTCACAGGGCAATTGGTCTTTCGAATATATCAAGCTCACCGCAAAAGTTGAAGTCTTGGAGAGGAACGTGAGGAATTTCCTGGGAAATGGACTGGATCCCTTGAATTTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACACATCTCTGAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATCAATCAATCTCAGAGCTGCATAAAAGGGCAAGGACATTGCAAGAGCAAAACAGCAAGCTAGCAAAGATGAAGGAGAAAGGGAAGACATTGAGTGAACGTCCACAGAGCGTACCAGAAACTCTTGGCCAAAATTCAACGAACCTCAACTTAGGTTCTCCACAGCTATTAGCACCACAAAGACTTGTTCCTTCTTTAACTCTCAGTGGGGCATTGCAAGGAAGAGGAACGGTGGAGGAAACGGGTGAAGCTCAAACAGTACCAACTGGCAATTCACTCATCCCACCATGGATGCTGCATATCTGA 741 0.4534 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSERSMEDVLERYERYTHTALTGTNNDSQGNWSFEYIKLTAKVEVLERNVRNFLGNGLDPLNLKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARTLQEQNSKLAKMKEKGKTLSERPQSVPETLGQNSTNLNLGSPQLLAPQRLVPSLTLSGALQGRGTVEETGEAQTVPTGNSLIPPWMLHI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00407 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun5g00407 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun5g00407 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun5g00407 246 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Viun5g00407 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Viun5g00407 246 MobiDBLite consensus disorder prediction 168 198 - -
Viun5g00407 246 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Viun5g00407 246 Coils Coil 123 179 - -
Viun5g00407 246 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun5g00407 246 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun5g00407 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun5g00407 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun5g00407 246 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Viun5g00407 246 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Viun5g00407 246 MobiDBLite consensus disorder prediction 179 198 - -
Viun5g00407 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00407 Viun-Chr5 2323224 2330275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00407 1 176 MADS-box Gene Family AT1G26310 62.431 1.26e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun5g00407 K-box 6.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00407 K09264 - gmx:100786580 382.489