Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00400 ATGGGATCAGTTTGTTGCTGTTTTAATGTTGATGATTTTGAAGATTATATGAATCCAAACAGTCCTGTATATAGGAACTGTATGTGTCTCAGTTGCTTCCTGCAGAACTTTTTGACTGTGTATGCATCAATATTCCGTAGAGGGGAACCACACGCGATTCCTTCATCTTTACAGGGCACAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATGTACCGCTCTCCTCCAAGGCCCTTGCCTTATGATTCAGACCCCAGGTTTTTCCGTTCACAGCGAGATGGATTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATGCTGACTCAGAATCTTTAAATTTGGGTGGTAAATGGAATGATACCAGTGAAGATGGATCAAAGGAATATCGTAAGTCCTCTGTGAGACTTTCATCAGCAAAACTTACGACTGGAGCTGGGGTTGTCTATTCATCGTCGGAAGTGGAGGATGTCTGTCCAACGTGTCTTGAAGAGTACACTGAAGAGAATCCAAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAATTGTCCTGTTTGTGGGAAGGAGATGGTATTCGATGAAACGACTTAA 678 0.4159 MGSVCCCFNVDDFEDYMNPNSPVYRNCMCLSCFLQNFLTVYASIFRRGEPHAIPSSLQGTASMTSTASLDNSLSDMYRSPPRPLPYDSDPRFFRSQRDGLVSRREKGSSHLNEESEPLRGDVDADSESLNLGGKWNDTSEDGSKEYRKSSVRLSSAKLTTGAGVVYSSSEVEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKEMVFDETT 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00400 225 MobiDBLite consensus disorder prediction 91 123 - -
Viun5g00400 225 Pfam RING-H2 zinc finger domain 169 215 IPR024766 GO:0008270
Viun5g00400 225 SUPERFAMILY RING/U-box 171 222 - -
Viun5g00400 225 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
Viun5g00400 225 CDD RING-H2_AIRP1-like 172 219 - -
Viun5g00400 225 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 223 - -
Viun5g00400 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 223 IPR013083 -
Viun5g00400 225 FunFam E3 ubiquitin-protein ligase At3g02290-like 152 222 - -
Viun5g00400 225 SMART ring_2 175 215 IPR001841 -
Viun5g00400 225 MobiDBLite consensus disorder prediction 71 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00400 Viun-Chr5 2305084 2311957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00400 1 224 C3H Transcription Factor Family AT5G15790 60.173 1.25e-95 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00400 - - gmx:100788192 444.891