Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00398 ATGTTTGCGAAATGTTTTGGTGAGTCAAGTTCATCTGGGAGAGAATATCCAACAGTAATAGAAGAGTTATGTCGTCATTTTTCTCTTGCTGATATTCGAAAATCAACCAACAATTTTGATGATAACAGAGTAATTGGACATGGAACATGTTGTAAGGTATTCAAAGGTTGTCTCCGACATAATGATGGTTCTTATTACCCAGTCGCGGTGAAGCGATTTCATTGGGAATACAGTGAAGGGTTTAAAAGAGAAGTGGAGTTACTGTGTCAGCTTCATCACCCTAATTGTGTGTCTATTGTAGGATTTTGCAAGCACAAAAAGGAGAGTATTGTTGTGTACGAGTACATGTCCAATGGATCTCTGGATCAACACCTGGGAAGTGATGTTAGAGAAGCACTGCCATGGAAAAAAAGGTTAGAGATTTGCGTAGGAGCAGCGCGTGGACTACACTACCTTCATTCAGGACTGAAGCGCACCATCATTCACCATGACATCAAACCTAGTAAAATTCTTTTGGACGACAACATGCACCCAAAACTCTCAGGTTTCAGCTGTAGCCTACTGGGAGCACATTTTAAGGAAAAGCCAAAACCAATAAAAACGGATTTTGCAGGTACTTATGGCTACGCACCTATGGAGTACTTACGGGACTGTACAGTCACAGATAAATGTGATGTTTACGCATTTGGTGTTGTTCTGCTAGAAGTTGTGAGCGGAAGTCTATATTTTCTTATACAAACAGAACTATTGGGGAAGTGTGTTGAGGAGAATATTGATCCGAAAATCAAAGGAGAGATAGCAGCAGAGTGTTGGCAAGTGTTTATAGATATAGCCTTGAGATGCATAAAGAATGAAGCTGATGAACGACCAGCAATGGGTGAAGTGGAGGTGGAACTTGAGCGTGCTCTATTGTTGCAGCAACAAGCAGATCTCACAAACATGGATAGGGATTATACCTTATTGTCCAAAAACATTATTATCCCAAAATCAGAGGGAGGATTTGAGTTTGTCACTGGCTAA 1020 0.4069 MFAKCFGESSSSGREYPTVIEELCRHFSLADIRKSTNNFDDNRVIGHGTCCKVFKGCLRHNDGSYYPVAVKRFHWEYSEGFKREVELLCQLHHPNCVSIVGFCKHKKESIVVYEYMSNGSLDQHLGSDVREALPWKKRLEICVGAARGLHYLHSGLKRTIIHHDIKPSKILLDDNMHPKLSGFSCSLLGAHFKEKPKPIKTDFAGTYGYAPMEYLRDCTVTDKCDVYAFGVVLLEVVSGSLYFLIQTELLGKCVEENIDPKIKGEIAAECWQVFIDIALRCIKNEADERPAMGEVEVELERALLLQQQADLTNMDRDYTLLSKNIIIPKSEGGFEFVTG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00398 339 PANTHER OS07G0166700 PROTEIN 23 306 IPR045272 GO:0004714|GO:0006468
Viun5g00398 339 Gene3D Transferase(Phosphotransferase) domain 1 116 324 - -
Viun5g00398 339 SUPERFAMILY Protein kinase-like (PK-like) 13 298 IPR011009 -
Viun5g00398 339 FunFam Receptor-like protein kinase ANXUR2 116 321 - -
Viun5g00398 339 FunFam Receptor-like protein kinase ANXUR2 5 115 - -
Viun5g00398 339 Gene3D Phosphorylase Kinase; domain 1 6 115 - -
Viun5g00398 339 Pfam Protein tyrosine and serine/threonine kinase 42 297 IPR001245 GO:0004672|GO:0006468
Viun5g00398 339 ProSiteProfiles Protein kinase domain profile. 39 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00398 Viun-Chr5 2300177 2301633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00398 7 310 Receptor kinase-like Gene Family AT3G51550 39.062 1.10e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Viun5g00398 PK_Tyr_Ser-Thr 3.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00398 - - var:108327132 465.692