Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00396 ATGATGATACTTTCACATTTAGGTACTTTTGGCCACTTATCTGTGGAGTACGTAAGGGACGGTACTGTAACCGATAAATGTGATGTTTACTCATTTGGTGTTGTTCTATTACAAGTTATGACCGGAAAAATAATTTATGGAAAGGATAAAGATCATTGTTTAGCAAAAGAACTGCTGGAGAAGTGTGTTGTTGAGGAGCTTATTGATCCGAAAATCAAAGGAAAGATAGCAGCAGAGTGTTGGCAAGTGTTTATAGACATCTTCTTAAGATGCATAAAGAGTGAAGCTGATGAACGACCAACAATGGGCGAAGTGGAGGTGGAACTTGAGCGTGCTCTATTGTTGCAGCAACAAGCAGATCTCACAAACATTGATATGGATTATACCTTATTGTCCAAAACCATTATTATCCCAAAATCAGAGAGACAAATTAATTATTTCATTGGCCAAAAACAAGAACAGGAATCCAATACAGTGACTTAG 483 0.3727 MMILSHLGTFGHLSVEYVRDGTVTDKCDVYSFGVVLLQVMTGKIIYGKDKDHCLAKELLEKCVVEELIDPKIKGKIAAECWQVFIDIFLRCIKSEADERPTMGEVEVELERALLLQQQADLTNIDMDYTLLSKTIIIPKSERQINYFIGQKQEQESNTVT 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00396 160 Gene3D Transferase(Phosphotransferase) domain 1 2 133 - -
Viun5g00396 160 ProSiteProfiles Protein kinase domain profile. 1 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00396 160 PANTHER OS07G0166700 PROTEIN 8 116 IPR045272 GO:0004714|GO:0006468
Viun5g00396 160 Pfam Protein tyrosine and serine/threonine kinase 13 107 IPR001245 GO:0004672|GO:0006468
Viun5g00396 160 SUPERFAMILY Protein kinase-like (PK-like) 5 107 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00396 Viun-Chr5 2297000 2297482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00396 8 127 Receptor kinase-like Gene Family AT3G51550 36.029 3.34e-21 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Viun5g00396 PK_Tyr_Ser-Thr 1.5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00396 - - vun:114186053 297.745