Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00394 ATGTTTCTGAAATGTTTTGGTGGGTCAAGCTCATCTGGGAGAGAATATCCAACAGTAATAGAAGAGTTGTGTCGTCATTTTTCTCTTGCTGATATTCGGAAATCAACCAACAATTTCGATGAAAACAGAGTAATTGGAGAAGGAGCAGTTGGTACAGTATACAGAGGTTGTCTCCAACATAATGATGGATCTGATTACGCAGTCGCAGTGAAGCGATTTAAGGCGCAATACAGTGAGGAGTTCAAAAGAGATGTAGAGTTACTGTGTCAACTTCATCACCCTAATTGTGTGTCTATTGTAGGGTTTTGCAACTGCGAAACAGAGAATATTATTGTGTATGAGTACATGTCCAATGGATCTCTAGATCAACACCTTGGAAGTGAGGTTAGAGAAGCACTGTCATGGAAAAAAAGGATAGAGATTTGCATAGGAGCAGCGCGAGGACTACACTACCTTCATGCAGGACTGAAGCGCACCATCATTCACCGCGACATCACACCCGACCACATTGTTTTGGATGAGAAGATGCACCCAAAACTCTCAGGTTTCAGGCTTTGCATACTGGGAGCACATTTCAAGGAAAGGCCAAAACCAATACAAACGGATCTTGCAGGTACTTACGGCTACTTACCTCTGGAGTACGCAAGGGACGGTACTGTAACCGATAAATGTGATGTTTACTCATTTGGTGTTGTTCTACTACAAGTTGTGAGCGGAAAAGGAATTTATGGACCGGATAAAGATCATTGTTTGGCAAAAGAACTTCTGGAGAAGTGTGTTGAGGAGCTTATTGATCCGAAAATCAAAGGAAAGATAGCAGCAGATTGTTGGCAAGTGTTTATAGATATCACCTTTAGATGCATAAAGAATGAAGCTGATGAACGACCAGCAATGGGTGAAGTAGAGGTGGAACTTGAGCTTGCTCTGTTGTTGCAGGAACAAGCAGATCTCAGAAACATCAATGGTGATTATACCTTATTGTCAGAAACCATTCTTAACCCAGAATCAGAGTGGGGGTGGGGATAA 1026 0.4211 MFLKCFGGSSSSGREYPTVIEELCRHFSLADIRKSTNNFDENRVIGEGAVGTVYRGCLQHNDGSDYAVAVKRFKAQYSEEFKRDVELLCQLHHPNCVSIVGFCNCETENIIVYEYMSNGSLDQHLGSEVREALSWKKRIEICIGAARGLHYLHAGLKRTIIHRDITPDHIVLDEKMHPKLSGFRLCILGAHFKERPKPIQTDLAGTYGYLPLEYARDGTVTDKCDVYSFGVVLLQVVSGKGIYGPDKDHCLAKELLEKCVEELIDPKIKGKIAADCWQVFIDITFRCIKNEADERPAMGEVEVELELALLLQEQADLRNINGDYTLLSETILNPESEWGWG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00394 341 PANTHER OS07G0166700 PROTEIN 23 312 IPR045272 GO:0004714|GO:0006468
Viun5g00394 341 Pfam Protein tyrosine and serine/threonine kinase 42 303 IPR001245 GO:0004672|GO:0006468
Viun5g00394 341 FunFam Receptor-like protein kinase ANXUR2 5 115 - -
Viun5g00394 341 Gene3D Phosphorylase Kinase; domain 1 9 115 - -
Viun5g00394 341 SUPERFAMILY Protein kinase-like (PK-like) 13 305 IPR011009 -
Viun5g00394 341 FunFam Receptor-like protein kinase ANXUR2 116 327 - -
Viun5g00394 341 ProSiteProfiles Protein kinase domain profile. 39 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00394 341 Gene3D Transferase(Phosphotransferase) domain 1 116 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00394 Viun-Chr5 2289913 2291173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00394 9 316 Receptor kinase-like Gene Family AT3G51550 41.195 1.93e-76 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Viun5g00394 PK_Tyr_Ser-Thr 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00394 - - var:108327132 447.203