Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00393 ATGTTTCTAAAATGTTTTGGTGAGTCGAGTTCATCTGGAAGACCATATCCAACAGTAATAGAAGAGCTGTGCCGTCATTTTTCTCTTGCTGATATTCGAAAATCAACCAACAATTTTGATGATAACAGAGTAATTGGAGAAGAAGGATGGACTAAAGTATACAAAGGTTGTCTCCAACATATTGATGGTTCTGATTACGCAGTCGCAGTGAAGCGATTTATTCCCGGTGAGCAGAGCACTGAAGCGTTCAAAAGAGAAGTAGAGTTAGTGTGTCAGCTTCATCACCCTAATTGCGTGTCTATTGTTGGATTTTGCAACCACAAAAAAGAGAAGATCATTGTGTATGAGTACATGTCCAATAGATCTCTATATAGGAATCTCCAAGAAGCACTTCCATGGAAAAAAAGGTTAGAGATTTGCATAGGAGCAGCGCGTGGACTACACTACCTTCATGCAGGACTCAAGCGCACCGTCATTCACCGCGACATCATACCAAGGCACATTCTTTTGGATCATAACATGCAACCAAAACTCTCAAGTTTCGAATTGAGTATACTGGGAGCACATTTCAAGAAAAGACCCAAACCAATACAAACGGATCTTAAAGGTACTATTGGCCACTTACCTCCGGAGTATTTAAGGGACTCCACTGTCACAGATAAATGTGATGTTTACGCCTTTGGTGGTGTTCTGCTAGAAGTTGTGTGCGGAAGTCTATTTTTTCTTAAACAAAACGAAGTACCGGAGAAGTGTGTTGAGGAGAATATTGATCCGAAAATCAAAGGAGAGATTGCAGCAGAGTGTTGGCAAGTGTTTATAGATATAGCCTTGAGATGCATAAAGAATGAAGCTGATGAACGACCAGCAATGGGTGAAGTGGAGGTGGAACTTGAGCGTGCTCTATTGTTGCAGCAACAAGCAGATCTCACAAACATCGATAGGGATTATACCTTATTGTCCAAAACCATTATTATCCAAAAATCAGAGGGAGGACTTAATTATTTCATTGGCCAAGAACAAGAACAGGAATCCAATACAGTGACTTAG 1047 0.4059 MFLKCFGESSSSGRPYPTVIEELCRHFSLADIRKSTNNFDDNRVIGEEGWTKVYKGCLQHIDGSDYAVAVKRFIPGEQSTEAFKREVELVCQLHHPNCVSIVGFCNHKKEKIIVYEYMSNRSLYRNLQEALPWKKRLEICIGAARGLHYLHAGLKRTVIHRDIIPRHILLDHNMQPKLSSFELSILGAHFKKRPKPIQTDLKGTIGHLPPEYLRDSTVTDKCDVYAFGGVLLEVVCGSLFFLKQNEVPEKCVEENIDPKIKGEIAAECWQVFIDIALRCIKNEADERPAMGEVEVELERALLLQQQADLTNIDRDYTLLSKTIIIQKSEGGLNYFIGQEQEQESNTVT 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00393 348 FunFam Receptor-like protein kinase ANXUR2 5 117 - -
Viun5g00393 348 ProSiteProfiles Protein kinase domain profile. 39 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00393 348 SUPERFAMILY Protein kinase-like (PK-like) 14 300 IPR011009 -
Viun5g00393 348 Gene3D Phosphorylase Kinase; domain 1 8 117 - -
Viun5g00393 348 Gene3D Transferase(Phosphotransferase) domain 1 118 321 - -
Viun5g00393 348 PANTHER OS07G0166700 PROTEIN 23 304 IPR045272 GO:0004714|GO:0006468
Viun5g00393 348 Pfam Protein tyrosine and serine/threonine kinase 43 295 IPR001245 GO:0004672|GO:0006468
Viun5g00393 348 FunFam Receptor-like protein kinase ANXUR2 118 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00393 Viun-Chr5 2280977 2282346 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00393 7 308 Receptor kinase-like Gene Family AT3G51550 40.625 1.88e-74 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Viun5g00393 PK_Tyr_Ser-Thr 1.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00393 - - var:108327132 471.855