Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00387 ATGGGTTCAGTCTGTAGCTGTTTTAATGTTAATGACGTTGAAGATTATTTGAATCCAAATAATCATGTATACAGGAACTGTACGTGTGTCAGTTGTTTCGTACAGTACTTTTTTACTGTGTATGCCTCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATACAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATTTATCGTTCTCCTCCGAGGCCGTTGCCTTATGACGCGGACCCCAGGTTTTTCCGGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAATCAGACCCTCTGAGAGGTGATGCAGATGCTGACACAGAATCTTTAAATTTGGGTGGCAAAAGGAATCATACCAGTGAAGATGGATCAAAGGAATACCGTAAGTCCACTGTGAGACTTTCATCAGCAAATCTTTCAACTGGAGCTGGGGTTGTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCCACTTGTCTAGAAGAATACACTGAAGAGAATCCAAAGATAGTGACAAAATGCTATCATCATTATCACCTTGGTTGCATATATGAGTGGATGGAAAGAAGTGAGAACTGTCCTGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA 657 0.4155 MGSVCSCFNVNDVEDYLNPNNHVYRNCTCVSCFVQYFFTVYASIFRRGEVHAIPSSIQGAASMTSTASLDNSLSDIYRSPPRPLPYDADPRFFRSRREKGSSHLNEESDPLRGDADADTESLNLGGKRNHTSEDGSKEYRKSTVRLSSANLSTGAGVVYSSSEEEDVCPTCLEEYTEENPKIVTKCYHHYHLGCIYEWMERSENCPVCGKVMVFDETT 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00387 218 SUPERFAMILY RING/U-box 163 215 - -
Viun5g00387 218 SMART ring_2 168 208 IPR001841 -
Viun5g00387 218 MobiDBLite consensus disorder prediction 98 116 - -
Viun5g00387 218 MobiDBLite consensus disorder prediction 98 142 - -
Viun5g00387 218 Pfam RING-H2 zinc finger domain 162 208 IPR024766 GO:0008270
Viun5g00387 218 CDD RING-H2_AIRP1-like 164 212 - -
Viun5g00387 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 215 IPR013083 -
Viun5g00387 218 FunFam E3 ubiquitin-protein ligase At3g02290-like 145 215 - -
Viun5g00387 218 ProSiteProfiles Zinc finger RING-type profile. 168 208 IPR001841 -
Viun5g00387 218 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00387 Viun-Chr5 2266324 2270070 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00387 1 216 C3H Transcription Factor Family AT5G38895 57.078 1.17e-89 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00387 - - gmx:100788192 396.356