Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00366 ATGGTTGATCAAGGTGATTTAGTTGTCATCTGTGTCTCTATTGGAGTGGCCCTTGGGATTTTGATAGCTTGCTTGGTATATTTTGGCATAAGGTGGTACAATAAGCGAACTCATCTAAGCCGATCTGCGAATGAGCCTAGTTTAACAGCTATCCCTATACGAACAAATGGAATAGGAACAAGCACTGATTTCAGTGCTTCACTCACCAGTTCCGTAGCCAATTATAGCTCACCAAATCCCCCAAAAAAATCACATCCAGCTGGGTGGAATCATCAGAGTAAAGATGGCTTTGCTTCTGTATCAGGCATTCTGAAGTATTCATACAAGGAAATTCAGAAGGCCACACAAAATTTCACAAATATTTTGGGAGAAGGGTCATTTGGCACAGTTTATAAAGCCATGATTCCTACAGGAGAGGTGGTAGCTGTAAAGATGCTTGCGCCCAATTCCAAACAAGGGGAGAAAGAATTTCTAACGGAGGTGTTTCTGCTAGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGGTACTGCGTAGATAAAGGACAGCTTATGCTTGTTTACGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTTTATATGGTGAAGAAAAAGAATTGAGTTGGGATGAAAGGCTGCAAATTGCTGCTGATATTTCACACGGAGTAGAATACCTTCATGAAGGGGCAGTACCACCTGTCGTCCATCGTGATTTGAAATCTGCTAATATTCTGCTAGATCACTCAATGCGAGCTAAGGTTTCTGATTTTGGGCTCTCAAAGGAAGAGATCTTTGATGGCCGTAATTCTGGCCTTAAAGGTACATATGGCTACATGGATCCAGCATACATTACCTCGAGCAAGTTCACAGTGAAGAGTGACATTTACAGTTTTGGTATAATAATTTTTGAGCTCATCACTGCCATCCACCCACATCAAAATTTGATGGAATATATCAACCTTGCTGCAATGGATTACGATGGTGTGGATGGGATTCTTGACAAGCAACTTGTGGGAAAATGCAACGTTGAGGAAGTGAGACAGCTTGCTAAAATTGCACACAAATGTTTGCACAAATCACCTAGGAAACGCCCCTCCATAAGTGAGGTTTCGCAGGCTATATTGGGGATTAAGCAAAGGCGTCTCATGAAAGAAGAGAACATGTCATTTGCAAGCACCAACTTCTCCCGAAGTGTGAGTCAAATAGATGAGCAACAGGTTGAATTAACTAGCATAATTACCATGAACCACAGGGAAATGGGGTGA 1269 0.4153 MVDQGDLVVICVSIGVALGILIACLVYFGIRWYNKRTHLSRSANEPSLTAIPIRTNGIGTSTDFSASLTSSVANYSSPNPPKKSHPAGWNHQSKDGFASVSGILKYSYKEIQKATQNFTNILGEGSFGTVYKAMIPTGEVVAVKMLAPNSKQGEKEFLTEVFLLGRLHHRNLVNLLGYCVDKGQLMLVYEFMSNGSLENLLYGEEKELSWDERLQIAADISHGVEYLHEGAVPPVVHRDLKSANILLDHSMRAKVSDFGLSKEEIFDGRNSGLKGTYGYMDPAYITSSKFTVKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDYDGVDGILDKQLVGKCNVEEVRQLAKIAHKCLHKSPRKRPSISEVSQAILGIKQRRLMKEENMSFASTNFSRSVSQIDEQQVELTSIITMNHREMG 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00366 422 Pfam Protein tyrosine and serine/threonine kinase 118 373 IPR001245 GO:0004672|GO:0006468
Viun5g00366 422 Gene3D Phosphorylase Kinase; domain 1 86 191 - -
Viun5g00366 422 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 392 - -
Viun5g00366 422 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Viun5g00366 422 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 192 399 - -
Viun5g00366 422 ProSiteProfiles Protein kinase domain profile. 116 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00366 422 CDD STKc_IRAK 122 373 - -
Viun5g00366 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Viun5g00366 422 FunFam serine/threonine-protein kinase PBS1-like 89 191 - -
Viun5g00366 422 SUPERFAMILY Protein kinase-like (PK-like) 94 373 IPR011009 -
Viun5g00366 422 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00366 422 Gene3D Transferase(Phosphotransferase) domain 1 192 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00366 Viun-Chr5 2170267 2175273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00366 89 375 Receptor kinase-like Gene Family AT1G79620 42.053 6.29e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Viun5g00366 PK_Tyr_Ser-Thr 3.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00366 - - gmx:100794239 752.281