Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00346 ATGCAGGGGAGAGAAATCACAGGACTGAACTATTTACTCCCTTCAGACCCTTATCCTTACCCTTCTCACTGCAGCATGACTCAGAACACCATCCCCACATTTCAACTCCACAAACTCTCAAACCAGTTCTATGGTTTCCAAAACCCTCAGCAAATGGTTGCAGAATTCAGCCCCCCTCAGTCCTCATGCATCAGCAGCACCACCTCCACCTCTGATGAAGCTGATGAGCAGCATCAAAGTCTCATCAATGAGAGGAAACACAGGAGGATGATTTCCAACCGTGAATCAGCACGAAGGTCACGCATGAGGAAGCAGAAGCACCTTGATGAACTCTGGTCGCAGGTGGTTTGGCTCAGGAATGAAAACCACCAGCTTATGGACAAGCTCAACCATGTGTCTGAATCACATGACAGAGTTTCTCAGGAGAATGTTCAGCTCAGAGAAGAAGCCTCAGAACTTCGCCAAATGATATGTGACATGCAGCTACATAGTCCTTACCACCCTCCTCCCCTCAGCCCCATTGACGATGATGTCTCTCCCTATGTCAAATCTGATTCCTCCATCACCAGCTCCTTCAACCTGCTTGGTTGA 591 0.4839 MQGREITGLNYLLPSDPYPYPSHCSMTQNTIPTFQLHKLSNQFYGFQNPQQMVAEFSPPQSSCISSTTSTSDEADEQHQSLINERKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLMDKLNHVSESHDRVSQENVQLREEASELRQMICDMQLHSPYHPPPLSPIDDDVSPYVKSDSSITSSFNLLG 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00346 196 CDD bZIP_plant_GBF1 86 137 IPR045314 GO:0003700|GO:0006355
Viun5g00346 196 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 88 103 IPR004827 GO:0003700|GO:0006355
Viun5g00346 196 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 83 146 IPR004827 GO:0003700|GO:0006355
Viun5g00346 196 SMART brlzneu 81 145 IPR004827 GO:0003700|GO:0006355
Viun5g00346 196 MobiDBLite consensus disorder prediction 57 76 - -
Viun5g00346 196 Pfam bZIP transcription factor 85 135 IPR004827 GO:0003700|GO:0006355
Viun5g00346 196 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 9 167 IPR044521 -
Viun5g00346 196 MobiDBLite consensus disorder prediction 57 77 - -
Viun5g00346 196 Gene3D - 83 138 - -
Viun5g00346 196 FunFam BZIP transcription factor 83 134 - -
Viun5g00346 196 SUPERFAMILY Leucine zipper domain 85 135 IPR046347 GO:0003700|GO:0006355
Viun5g00346 196 Coils Coil 129 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00346 Viun-Chr5 2069821 2070696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00346 43 180 bZIP Transcription Factor Family AT3G30530 62.857 1.73e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Viun5g00346 bZIP_1 7.1e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00346 - - gmx:780548 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00346 5 2069821 2070696 Viun5g00346 5 2069821 2070696 ECH
Viun4g00882 4 7633605 7634479 Viun5g00346 5 2069821 2070696 PCT