Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00341 ATGTTGGAAGGAGAATCAGCTGGCACGTGGGCGCGCACGTGCGACACGTGCCGCTCCGCAGCCTCCACCGTCTTCTGCCGCGCCCACAACGCCTACCTCTGCGCCTCCTGCGATGGCCGCGTGCACCACGCGTCCTCCTCCTCTTGGCACGAGCGCGTGTGGGTCTGCGAAGCCTGCGAGCGGGCCCCCGCCGCGTTCCTCTGCAAGGCCGACGCTGCCTCCCTATGCTCCTCATGCGACGCCGACATCCACTCCGCCAACCCCCTCGCAAGCCGCCATCACCGCGTCCCCATCCTCCCCATCGCCGCCGGCCACCACTCTCACGTCGAAATCGACGTCGCCGACGACGACGATGGTGCTGACGTGGATGACGAAGACGAAACCGCTTCCTGGCTCTTGCTCAACCCTGTCAAAACCGGCACTGTCCCTAACAGCAACAATAATGGGTTCTTGTACAGTGGTGAGGTTGACGAGTATTTGGACCTTGTTGATAACTGTAACTCGTGTGGTGACAACAACCACTTCGCTGCAACCACCACCACTGCCACCACCGCTGATCATTACGGTCAGCACCATCATTTTGATGCTGTTTCTCAGAAGAGTTATGCCGGGGACAGTGTGGTTCCGGTTCAGCAGCACCAGCATTTTCAGCTTGGCTTGGACTTCGAGAACTCTAAAGCTGCCTTCAGTTACAATGGTTCTATTAGTCAAAGTATTTCAGTTTCATCGATGGATATTGGTGTTGTACCCGAATCACCGATGAGGGATGTCTCAATTTCTTACAAGGCCCCCAAAGGGACGATTGACCTATTTTCTGGACCCCCCATTCAGATGCCTTCACACTTTTCTCCAATGGACAGGGAAGCCAGAGTTCTAAGGTACAGAGAGAAAAAGAAGACAAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACCAGACCCAGAATAAAGGGTCGATTCGCCAAGAGAACAGATGTGGAAGCTGAAGTGGATCAGATGTTCTCCACAACACTAATTACAGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 1071 0.5415 MLEGESAGTWARTCDTCRSAASTVFCRAHNAYLCASCDGRVHHASSSSWHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPIAAGHHSHVEIDVADDDDGADVDDEDETASWLLLNPVKTGTVPNSNNNGFLYSGEVDEYLDLVDNCNSCGDNNHFAATTTTATTADHYGQHHHFDAVSQKSYAGDSVVPVQQHQHFQLGLDFENSKAAFSYNGSISQSISVSSMDIGVVPESPMRDVSISXYKAPKGTIDLFSGPPIQMPSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00341 357 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 14 344 IPR045281 GO:0009909
Viun5g00341 357 CDD Bbox1_BBX-like 14 55 - -
Viun5g00341 357 CDD Bbox1_BBX-like 55 98 - -
Viun5g00341 357 ProSiteProfiles Zinc finger B-box type profile. 9 55 IPR000315 GO:0008270
Viun5g00341 357 Pfam CCT motif 288 330 IPR010402 GO:0005515
Viun5g00341 357 ProSiteProfiles CCT domain profile. 288 330 IPR010402 GO:0005515
Viun5g00341 357 SMART bboxneu5 51 98 IPR000315 GO:0008270
Viun5g00341 357 SMART bboxneu5 9 48 IPR000315 GO:0008270
Viun5g00341 357 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Viun5g00341 357 Pfam B-box zinc finger 53 98 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00341 Viun-Chr5 2016306 2018809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00341 1 357 C2C2-CO-like Transcription Factor Family AT3G02380 54.692 2.96e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Viun5g00341 zf-B_box 3.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00341 K12135 - gmx:100301886 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00892 4 7806976 7809173 Viun5g00341 5 2016306 2018809 PCT