Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00318 ATGGCTTCAACCAACCCTTCTCCAAATGCTTCCCCTGTTGCAGTGCCTCCGGTTCTTGGTGGTGTTTTATCACCACCACCATCTTCATCTTCTCCGACCAATTCCTCCACCACTCCTCCATCACCTCCCAATTCTTCCCAGCCCAATCAAACACCCAATTCCCCTGCTCCTTCATCTCCTTCATCTCCCTCTGACCCTTCAGCTCCACCTCCTTCACCTCCTCAGGCAGTGCCTGCAACCCCTCCTCCTTCCATATCAGTCTCTCCTCCACCATCTTCTCCACCACCACCAACACCAACTCTGCCCCCTCCTTCACCACCAGATTCTCCTCCTCCATTACCACCAGCATCTCCAACGCCACCAGTTGTAACACCTCCCCCTCCACCAGCCACCACCACTGCTCCTCCTCCACCTTCCCCTCCAGTTTTGTCTCCACCATCTTCACCAACTGTTTCCCCTCCTCCCCAATCTCCTCTCTCTACAATTCCCCCTCCTTCTCAGCCAATTTCACCATCTCCTCCTCCTCCAGCCAATGTTCCAAGGCCACCATCCACCGGTACTCCTCCACAGAAAGAAAGTCCTCCGAAAACTACTCCTTCACATGCACCCCCTCCATCAGTTTCTCAATCTCCTCCTAAGCCTCCTCCTTCTGATGTTCCCCCTCCATCCACATTGCCATCAACTCCTCCTTCAGTCCCTTCAGGATCTTCACCTCCAGCTTCTTTGCCTGACCCCCCAACCAATGAAACGGCCGTTGGGGGTCCACCGGTACCACTGCCGTCTCTTCCAACTGAGAAACCCACTGCTAGACCAACTAATGATGGTTCTAACGATATAGGTACAAACAACACGCCTTCACATTCAGGAGTGTTAAGTGCTGGAGGATCCGTCGCCATTGGAATTGTAGTTGGTTTTATTGTCCTCAGTTTTCTTGTTATGGCCGTGTGGTTTGTACAGAAGAAAAAGAAGAAGGAAAAAGGATCAAGAGGTGGTTATGCTGCTCCTTCTCCATTTACCTCATCCCACAATTCAGGTACCTTATTCTTGAGGCCACAGTCTCCAGCCAACTTTGTAGCAGGTAGTGCATCAGGTAGTGATTTTGTGTATTCTCCATCAGAACCAGGTGGAGTAAGTAGCTCAAGATCATGGTTCACGTATGAAGAACTTATCCAAGCTACAAATGGATTTTCGGCACAAAATTTGCTGGGAGAAGGTGGATTTGGTTGTGTCTATAAAGGTTTACTCGTAGATGGAAGAGAAGTAGCTGTGAAACAGCTAAAAATTGGTGGTGGGCAAGGGGAACGTGAATTCAGGGCAGAAGTTGAGATTATCAGCCGTGTGCATCATCGGCATCTGGTTTCCTTGGTTGGTTACTGTATATCTGAACATCAGAGATTGCTTGTATATGACTATGTTCCCAACAATACTCTTCATTACCATCTCCATGAAGAAAATAGACCAGTACTGGATTGGCCTACCAGAATCAAGGTTGCTGCTGGTGCAGCTCGAGGAATAGCTTACCTGCATGAAGACTGTCATCCACGCATTATTCATCGAGATATTAAGTCGTCGAACATCCTTCTTGATCTCAACTATGAAGCTCGAGTTTCTGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTTACAACACGAGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCAACAAGTGGGAAACTAACGGAAAAGTCTGATGTATATTCCTACGGTGTTGTGCTTTTGGAGTTAATTACAGGTCGGAAACCTGTTGATGCATCTCAACCAATTGGTGATGAGAGCCTCGTTGAATGGGCTCGGCCTTTGTTGAGTGAAGCACTTGAGAAGGAGGACTTTGAAATCTTGGTGGATCCAAGACTGGGGAAGAACTACGACAGAAACGAAATGTTCCGGATGATCGAGGCCGCCGCATCCTGTGTACGCCACTCGTCGGTGAAGAGGCCGCGCATGAGTCAGGTGGTGAGAGCTTTAGATTCCTTAGACGAGTTTACGGATCTGAATAATGGAATGAAACCGGGGCAGAGTTCGGTGTTTGATTCTGCACAGCAATCTGCACAGATAAGAATGTTTAGGAGGATGGCTTTTGGGAGCCAAGATAGTTCAAGTTTCTTCAATGAGTCTCAGAGTAGCTGGAGGAGTAGAGATCAAGACTCGACAACCATGTTTTCCCAAAACAAAACTGGTCCTTGGAACGTTTGA 2235 0.4796 MASTNPSPNASPVAVPPVLGGVLSPPPSSSSPTNSSTTPPSPPNSSQPNQTPNSPAPSSPSSPSDPSAPPPSPPQAVPATPPPSISVSPPPSSPPPPTPTLPPPSPPDSPPPLPPASPTPPVVTPPPPPATTTAPPPPSPPVLSPPSSPTVSPPPQSPLSTIPPPSQPISPSPPPPANVPRPPSTGTPPQKESPPKTTPSHAPPPSVSQSPPKPPPSDVPPPSTLPSTPPSVPSGSSPPASLPDPPTNETAVGGPPVPLPSLPTEKPTARPTNDGSNDIGTNNTPSHSGVLSAGGSVAIGIVVGFIVLSFLVMAVWFVQKKKKKEKGSRGGYAAPSPFTSSHNSGTLFLRPQSPANFVAGSASGSDFVYSPSEPGGVSSSRSWFTYEELIQATNGFSAQNLLGEGGFGCVYKGLLVDGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHEENRPVLDWPTRIKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDLNYEARVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSYGVVLLELITGRKPVDASQPIGDESLVEWARPLLSEALEKEDFEILVDPRLGKNYDRNEMFRMIEAAASCVRHSSVKRPRMSQVVRALDSLDEFTDLNNGMKPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSSFFNESQSSWRSRDQDSTTMFSQNKTGPWNV 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00318 744 ProSiteProfiles Protein kinase domain profile. 396 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00318 744 SUPERFAMILY Protein kinase-like (PK-like) 374 669 IPR011009 -
Viun5g00318 744 ProSitePatterns Protein kinases ATP-binding region signature. 402 424 IPR017441 GO:0005524
Viun5g00318 744 Gene3D Phosphorylase Kinase; domain 1 372 471 - -
Viun5g00318 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Viun5g00318 744 FunFam Proline-rich receptor-like protein kinase PERK8 369 471 - -
Viun5g00318 744 MobiDBLite consensus disorder prediction 1 285 - -
Viun5g00318 744 FunFam proline-rich receptor-like protein kinase PERK8 472 684 - -
Viun5g00318 744 MobiDBLite consensus disorder prediction 718 744 - -
Viun5g00318 744 Gene3D Transferase(Phosphotransferase) domain 1 472 688 - -
Viun5g00318 744 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 305 717 IPR047117 -
Viun5g00318 744 Pfam Protein tyrosine and serine/threonine kinase 399 669 IPR001245 GO:0004672|GO:0006468
Viun5g00318 744 MobiDBLite consensus disorder prediction 266 285 - -
Viun5g00318 744 SMART serkin_6 396 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00318 744 MobiDBLite consensus disorder prediction 32 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00318 Viun-Chr5 1898902 1904471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00318 265 728 Trihelix Transcription Factor Family AT5G38560 70.613 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Viun5g00318 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00318 - - gmx:100790988 937.176