Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00300 ATGTCTGCAATGGTTTCAGCTCTTTCTCAAGTTATGGGAACTTCAAATCGGAACCCTCCTATGTCACAATCAACCTCTTTTCCTTTCTCAAACTTCGACACCAAAGATCAACCTCAACCTCAACCTCAACCTCAACCTTCTTCAGATAAAGGAGTGACAAAGAAGGCACACTACAGAGGAGTGAGACAGAGACCATGGGGGAAATGGGCAGCAGAAATCCGTGACCCAAAAAAAGCAGCAAGAGTGTGGTTAGGAACCTTCGAAACCGCAGAAGATGCAGCACTTGCATATGACAGAGCAGCACTCAAGTTCAAAGGCACAAAAGCAAAGCTTAATTTCCCCGAAAGAGTTCATCACAATGTTTCTTTTATGCACCAAAACCATGAATCTTCATCAAACACAAACACTTTTCCCTCCCATGCAACTTCCAACGCTGTTTCTTCTGCTCATGATGTTGCTGCTCCACCCTCATTTTCCACACACGATCAACATGGCCACCAACTTTTCCCAAACCTGCTTCAATACGCTCAGATTCTTTCAAGCGATGATGCACAGTTTCCTTACTACACATCCCATCTTTTCAACAATCAACAACAACATCAGCAACATCAGCAGCAGCAACAACAAGATCCTTTCAGCTCTCAATTCTCCACCACTTTTTCTTCAACCTCTTCTCAAGCATCCTACTTCTACAACCACCAACAACAATTTGATGAACAGGGACATGGTCATTCAGGCCAGTAG 744 0.4382 MSAMVSALSQVMGTSNRNPPMSQSTSFPFSNFDTKDQPQPQPQPQPSSDKGVTKKAHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDRAALKFKGTKAKLNFPERVHHNVSFMHQNHESSSNTNTFPSHATSNAVSSAHDVAAPPSFSTHDQHGHQLFPNLLQYAQILSSDDAQFPYYTSHLFNNQQQHQQHQQQQQQDPFSSQFSTTFSSTSSQASYFYNHQQQFDEQGHGHSGQ 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00300 247 SUPERFAMILY DNA-binding domain 57 115 IPR016177 GO:0003677
Viun5g00300 247 CDD AP2 56 115 IPR001471 GO:0003700|GO:0006355
Viun5g00300 247 Gene3D AP2/ERF domain 56 116 IPR036955 GO:0003700|GO:0006355
Viun5g00300 247 PANTHER DNA-BINDING DOMAIN 26 214 IPR044808 GO:0003700|GO:0009873
Viun5g00300 247 MobiDBLite consensus disorder prediction 196 219 - -
Viun5g00300 247 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Viun5g00300 247 MobiDBLite consensus disorder prediction 1 63 - -
Viun5g00300 247 MobiDBLite consensus disorder prediction 1 38 - -
Viun5g00300 247 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Viun5g00300 247 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Viun5g00300 247 MobiDBLite consensus disorder prediction 126 163 - -
Viun5g00300 247 Pfam AP2 domain 57 106 IPR001471 GO:0003700|GO:0006355
Viun5g00300 247 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Viun5g00300 247 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00300 Viun-Chr5 1761009 1763952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00300 4 202 AP2-EREBP Transcription Factor Family AT5G13330 47.500 4.99e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun5g00300 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00300 - - vun:114185501 442.965