Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00298 ATGGCTCTGGACCAGCCTTCCAACCCCAACGCCGTTGACGGGGCGGGTAACGGCGCCACGCCGTGCTCCGCCGCGGACGGGGCCGACGACGGAAGGCCGGCGGCGAGGCTGCCGCGGTGGACGCGGCAGGAGATTCTGGTGCTGATTCAGGGGAAGAGTGACGCGGAGAACCGGTTCAGACCGGGTCGGGGGAGCGGTTCGGCGTTCGGTTTGAGCGAGCCGAAATGGGCGCTGGTCTCGGCGTACTGCAAAAAGCACGGCGTGAACCGGGAGCCGGTGCAGTGCCGGAAGCGGTGGAGCAACCTCGCCGGCGATTACAAGAAGATCAAGGAGTGGGAGTTGCAGGTCAGGGACGAAACGGAGTCGTTTTGGCTCATGAGGAACGATTTGAGGAGGGAGAGGAAATTGCCCGGTTATTTTGACAGGGAAGTGTATAATATTCTCGATTCTCCATCCACTGCAGCTGCTGCGACGGTGGAGACTCCTACGGCCGCGGTGGAGGCGGCGGTGGATGAGGAAGTGCACCTGTATGATAGTAATCGGAGAGTTGGGAGTGATGATGGTTTGTTCTCTGATTGTGAGAAGGAGGATGTTTTGCTTTCGGCTCCTGCCAAGGATGTTCCTGCACCCGTTCCAATCTCAGAGAAGCAGTTTCAACCACTCCTTCAACTATGTGAAGGAGAAGGCAATGCTGAAGGTACTACCAATGAGAAACGGGCAACCCCAAATCCAGAGATGGGTTCTACATCTCAAGGCGGACGGAAGAGGAAGCGATTTTCAACCGACACAGAGGAGGAAAGTTTGCAAAGTCAATTAATTGATGTCTTAGAAAAGAATGGCAAAATGCTTCGTGATCATCTTGAAACTCAGAATACCAATTTCCAATTGGATCGCCAGCAGCAGAAAGACACTGCAACTAACATAGTTGCTGTACTTGATAAGCTGGCAGATGCTCTAGGGAGAATTGCTGATAAATTGTAG 981 0.5423 MALDQPSNPNAVDGAGNGATPCSAADGADDGRPAARLPRWTRQEILVLIQGKSDAENRFRPGRGSGSAFGLSEPKWALVSAYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWELQVRDETESFWLMRNDLRRERKLPGYFDREVYNILDSPSTAAAATVETPTAAVEAAVDEEVHLYDSNRRVGSDDGLFSDCEKEDVLLSAPAKDVPAPVPISEKQFQPLLQLCEGEGNAEGTTNEKRATPNPEMGSTSQGGRKRKRFSTDTEEESLQSQLIDVLEKNGKMLRDHLETQNTNFQLDRQQQKDTATNIVAVLDKLADALGRIADKL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00298 326 MobiDBLite consensus disorder prediction 1 37 - -
Viun5g00298 326 ProSiteProfiles Myb-like domain profile. 32 103 IPR001005 -
Viun5g00298 326 MobiDBLite consensus disorder prediction 234 250 - -
Viun5g00298 326 CDD GT1 38 110 - -
Viun5g00298 326 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 6 326 - -
Viun5g00298 326 MobiDBLite consensus disorder prediction 228 267 - -
Viun5g00298 326 Pfam Myb/SANT-like DNA-binding domain 39 125 IPR044822 -
Viun5g00298 326 Gene3D - 40 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00298 Viun-Chr5 1738396 1742442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00298 39 111 Trihelix Transcription Factor Family AT1G33240 34.247 8.85e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun5g00298 Myb_DNA-bind_4 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00298 - - gmx:100788594 548.51