Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00296 ATGTTTAGGAAAAGGCACATCGCTTCTTCTCTTGCCAGAGAATTGTTGGCACTCCAGCCACTTTTTATTCTATTCTTGTTCAGCTTGCACCACAACACTGTGCAATGTCAAGGAAGGTTGAGTAAACATGTTTCTTCAGAGCCTCCCTCGCCTTCTAGGCCATCACCACCATCATCATCAGGATACAAGGATGACCCCAAGAAGATAATTTTTAGCTTGGTTTTAGGAGCAGTAACTGGACTGGTTTGTTCTGTTTTCTTTGCACTTGTGGTACGTTGTGTGGTGCAGTACCTAAACCGCACACCAATCCTCAAGGGGCCTGTTATTTTCTCCCCCAAAATTGCCCCCAAGACACTCCAAATAGCTTTGGCCAAGGAAAACCACTTGCTTGGTTCGAGTCCTAATGGGAAATACTACAAAACCGTGCTTGACAATGGACTCACTATTGCAGTGAAAAGGCTAACACCCTTTGGGAGCAACTCTCCAGAGGCTAAGAAAAAATCATTGAAGAGGCAGATACAAACTGAGCTAGAGCTTCTTGCAAGCTTAAGACACAGGAACTTGATGAGTTTGAGAGCCTATGTACGTGAGCCTGATGGTTTCTCATTGGTTTATGATTATGTGTCCACTGGGAGTCTTTCTGATGTGATGAACAGAGTGTGGGAGAATGAGTTGGCCTTTGGTTGGGAAGTTAGGCTCAGGATTGCTGTTGGTGTGGTGAAGGGTCTTCAGTATCTTCACTTCACTTGTGCGCCTCAGATATTGCACTTCAACTTGAAGCCAACAAATGTCATGCTGGATGGTGATTTTGAACCCAGATTAGCAGATTATGGTTTGGCCAAACTTTTACCCAACTTGGATAGAGGAACTTCTCTCTACACTCCACCTGAATGTTTCCACAATTGCAGCAGGTACACTGACAAAAGTGACATCTTCAGTTTTGGCATGATACTAGGTGTTTTGTTAACGGGTAAGGACCCTACAGATCCATTTTTTGGAGAAGCAGCGAGTGGTGGAAGTTTGGGATGTTGGCTGAGACACTTGCAGCAAGCCGGTGAGGCGAGGGATGCCCTTGATAAGAGCATGTTAGGTGAAGAAGGAGAGGAAGATGAGATGTTAATGGCTGTTAGGATTGCTGCTGCATGCCTCTCTGATATGCCTGCAGATAGGCCTTCTAGTGACGAGCTTGTTCACATGCTAACGCAACTGCACAGTTTTTGA 1221 0.4521 MFRKRHIASSLARELLALQPLFILFLFSLHHNTVQCQGRLSKHVSSEPPSPSRPSPPSSSGYKDDPKKIIFSLVLGAVTGLVCSVFFALVVRCVVQYLNRTPILKGPVIFSPKIAPKTLQIALAKENHLLGSSPNGKYYKTVLDNGLTIAVKRLTPFGSNSPEAKKKSLKRQIQTELELLASLRHRNLMSLRAYVREPDGFSLVYDYVSTGSLSDVMNRVWENELAFGWEVRLRIAVGVVKGLQYLHFTCAPQILHFNLKPTNVMLDGDFEPRLADYGLAKLLPNLDRGTSLYTPPECFHNCSRYTDKSDIFSFGMILGVLLTGKDPTDPFFGEAASGGSLGCWLRHLQQAGEARDALDKSMLGEEGEEDEMLMAVRIAAACLSDMPADRPSSDELVHMLTQLHSF 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00296 406 MobiDBLite consensus disorder prediction 40 63 - -
Viun5g00296 406 Gene3D Phosphorylase Kinase; domain 1 117 207 - -
Viun5g00296 406 Coils Coil 166 186 - -
Viun5g00296 406 ProSiteProfiles Protein kinase domain profile. 124 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00296 406 Gene3D Transferase(Phosphotransferase) domain 1 208 405 - -
Viun5g00296 406 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 31 402 - -
Viun5g00296 406 Pfam Protein kinase domain 126 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00296 406 SUPERFAMILY Protein kinase-like (PK-like) 127 400 IPR011009 -
Viun5g00296 406 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 116 207 - -
Viun5g00296 406 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 208 405 - -
Viun5g00296 406 CDD STKc_IRAK 130 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00296 Viun-Chr5 1720330 1723447 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00296 34 403 Receptor kinase-like Gene Family AT2G31880 32.282 5.14e-64 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Viun5g00296 Pkinase 5.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00296 - - vra:106759565 757.288