Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00295 ATGTTTAGGAAAAGGCACATCGCTTCTTCTCTTGCCAGAGAATTGTTGGCACTCCAGCCACTTTTTATTCTATTCTTGTTCAGCTTGCACCACAACACTGTGCAATGTCAAGGAAGGTTGAGTAAACATGTTTCTTCAGAGCCTCCCTCGCCTTCTAGGCCATCACCACCATCATCATCAGGATACAAGGATGACCCCAAGAAGATAATTTTTAGCTTGGTTTTAGGAGCAGTAACTGGACTGGTTTGTTCTGTTTTCTTTGCACTTGTGGTACGTTGTGTGGTGCAGTACCTAAACCGCACACCAATCCTCAAGGGGCCTGTTATTTTCTCCCCCAAAATTGCCCCCAAGACACTCCAAATAGCTTTGGCCAAGGAAAACCACTTGCTTGGTTCGAGTCCTAATGGGAAATACTACAAAACCGTGCTTGACAATGGACTCACTATTGCAGTGAAAAGGCTAACACCCTTTGGGAGCAACTCTCCAGAGGCTAAGAAAAAATCATTGAAGAGGCAGATACAAACTGAGCTAGAGCTTCTTGCAAGCTTAAGACACAGGAACTTGATGAGTTTGAGAGCCTATGTACGTGAGCCTGATGGTTTCTCATTGGTTTATGATTATGTGTCCACTGGGAGTCTTTCTGATGTGATGAACAGAGTGTGGGAGAATGAGTTGGCCTTTGGTTGGGAAGTTAGGCTCAGGATTGCTGTTGGTGTGGTGAAGGGTCTTCAGTATCTTCACTTCACTTGTGCGCCTCAGATATTGCACTTCAACTTGAAGCCAACAAATGTCATGCTGGATGGTGATTTTGAACCCAGATTAGCAGATTATGGTTTGGCCAAACTTTTACCCAACTTGGATAGAGGAACTTCTCTCTACACTCCACCTGAATGTTTCCACAATTGCAGGTACACTGACAAAAGTGACATCTTCAGTTTTGGCATGATACTAGGTGTTTTGTTAACGGGTAAGGACCCTACAGATCCATTTTTTGGAGAAGCAGCGAGTGGTGGAAGTTTGGGATGTTGGCTGAGACACTTGCAGCAAGCCGGTGAGGCGAGGGATGCCCTTGATAAGAGCATGTTAGGTGAAGAAGGAGAGGAAGATGAGATGTTAATGGCTGTTAGGATTGCTGCTGCATGCCTCTCTGATATGCCTGCAGATAGGCCTTCTAGTGACGAGCTTGTTCACATGCTAACGCAACTGCACAGTTTTTGA 1218 0.4516 MFRKRHIASSLARELLALQPLFILFLFSLHHNTVQCQGRLSKHVSSEPPSPSRPSPPSSSGYKDDPKKIIFSLVLGAVTGLVCSVFFALVVRCVVQYLNRTPILKGPVIFSPKIAPKTLQIALAKENHLLGSSPNGKYYKTVLDNGLTIAVKRLTPFGSNSPEAKKKSLKRQIQTELELLASLRHRNLMSLRAYVREPDGFSLVYDYVSTGSLSDVMNRVWENELAFGWEVRLRIAVGVVKGLQYLHFTCAPQILHFNLKPTNVMLDGDFEPRLADYGLAKLLPNLDRGTSLYTPPECFHNCRYTDKSDIFSFGMILGVLLTGKDPTDPFFGEAASGGSLGCWLRHLQQAGEARDALDKSMLGEEGEEDEMLMAVRIAAACLSDMPADRPSSDELVHMLTQLHSF 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00295 405 MobiDBLite consensus disorder prediction 40 63 - -
Viun5g00295 405 Gene3D Phosphorylase Kinase; domain 1 117 207 - -
Viun5g00295 405 Coils Coil 166 186 - -
Viun5g00295 405 CDD STKc_IRAK 130 402 - -
Viun5g00295 405 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 31 401 - -
Viun5g00295 405 Pfam Protein kinase domain 126 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00295 405 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 116 207 - -
Viun5g00295 405 SUPERFAMILY Protein kinase-like (PK-like) 127 399 IPR011009 -
Viun5g00295 405 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 208 404 - -
Viun5g00295 405 ProSiteProfiles Protein kinase domain profile. 124 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00295 405 Gene3D Transferase(Phosphotransferase) domain 1 208 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00295 Viun-Chr5 1720330 1723458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00295 34 402 Receptor kinase-like Gene Family AT2G31880 32.117 1.30e-64 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Viun5g00295 Pkinase 1.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00295 - - vra:106759565 751.125