Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00294 ATGTGTTCTCTTCTTTGGAGTTCCATTGTTATGTGTGTAACAATTCAACTTCTTCAGCTTGGCATTGTGCACCCTTCACCCTCTCATATTAGGATCACTCACTTACCGGGCCAACCCCAAGTTGAGTTTCACCAGTTTTCAGGTTATGTAAATGTTGATGACAGAAACCAGCAAGCACTCTTTTTCTACTTTGCTGAAGCTGAAAAAGATGCAGCTTCCAAGCCCCTTGTTCTGTGGCTCAATGGAGGGCCTGGTTGTTCTTCTCTTGGGGTTGGTGCGTTTTCAGAGAATGGACCATTTAGGCCCAAAGGAGAAGGCTTGGTTAGGAATCAATTCAGCTGGAACAGAGAAGCTAATATGCTGTATTTGGAAACGCCAATTGGAGTTGGATTCTCTTACTCAACTGATACTTCTGCTTATGAGGGTGTGAATGACAAAATCACAGCCAGGGATAACTTGGTGTTCTTGAAAAACTGGTTTATAAAGTTCCCAGAATACAGAAACAGAAGTTTATTCATTGTAGGAGAAAGCTATGCAGGCCATTATGTTCCTCAACTGGCTGAGCTTATGCTCCAATTCAACAAAAAGGAGAAGTTGTTCAATCTGAAAGGCATTGCTCTTGGTAATCCAGTTCTAGAATTTGCCACAGATTTCAATTCGAGAGCAGAGTTCTTCTGGTCACATGGATTAATTTCAGATACAACGTACAAAGTGTTCTCTTCTGTTTGTAACTATTCAAGATATGTGAGGGAATACTACAATGGTGCTGTTTCTCCTGTCTGTTCAAGTGTTATGAGCCAAGTTAGTACAGAAACAAGTAGATTTGTGGACAAGTATGATGTGACCCTTGATGTTTGTTTATCTTCAGTGTTTTCACAAACCAAAGTCCTCAATCCCCAGCAAGTCACTGAAACGATAGATGTATGTGTGGAAGATGAAACAGTCAATTATCTGAACAGAAAAGATGTGCAATCAGCTTTGCATGCACGTCTTGTTGGAGTTCAAAGATGGTCTGCTTGCAGCAATGTCCTTGATTATGAGCTGCGTGACTTGGAAATACCAACAATCACTGTTGTGGGGAAGCTAGTACAGGAGGGAATACCCGTACTGGTATACAGTGGTGATCAGGATTCAGTAATCCCTCTGACTGGAAGTAGAACATTAGTACATAAATTGGCAAAAAAGCTAGGATTGAAAACCACTGTGCCATACAGGGTGTGGTTTGAGAAGCAGCAGGTGGGTGGGTGGACTCAAGTTTATGGTGACATTCTTTCATTTGCCACCATCAGAGGAGCATCACATGAGGCTCCATTTTCACAGCCTGAGAGGTCACTGGTGCTGTTCAAGTCCTTCTTAGAAGGACGACCAATGCCACAAGAGTTTTGA 1386 0.4221 MCSLLWSSIVMCVTIQLLQLGIVHPSPSHIRITHLPGQPQVEFHQFSGYVNVDDRNQQALFFYFAEAEKDAASKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGEGLVRNQFSWNREANMLYLETPIGVGFSYSTDTSAYEGVNDKITARDNLVFLKNWFIKFPEYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDTTYKVFSSVCNYSRYVREYYNGAVSPVCSSVMSQVSTETSRFVDKYDVTLDVCLSSVFSQTKVLNPQQVTETIDVCVEDETVNYLNRKDVQSALHARLVGVQRWSACSNVLDYELRDLEIPTITVVGKLVQEGIPVLVYSGDQDSVIPLTGSRTLVHKLAKKLGLKTTVPYRVWFEKQQVGGWTQVYGDILSFATIRGASHEAPFSQPERSLVLFKSFLEGRPMPQEF 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00294 461 FunFam Carboxypeptidase 355 454 - -
Viun5g00294 461 Pfam Serine carboxypeptidase 36 454 IPR001563 GO:0004185|GO:0006508
Viun5g00294 461 SUPERFAMILY alpha/beta-Hydrolases 32 458 IPR029058 -
Viun5g00294 461 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Viun5g00294 461 Gene3D - 356 454 - -
Viun5g00294 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 441 IPR001563 GO:0004185|GO:0006508
Viun5g00294 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 184 IPR001563 GO:0004185|GO:0006508
Viun5g00294 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185|GO:0006508
Viun5g00294 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Viun5g00294 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185|GO:0006508
Viun5g00294 461 FunFam Carboxypeptidase 25 458 - -
Viun5g00294 461 ProSitePatterns Serine carboxypeptidases, serine active site. 173 180 IPR018202 GO:0004185
Viun5g00294 461 Gene3D alpha/beta hydrolase 28 288 IPR029058 -
Viun5g00294 461 Gene3D - 309 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00294 Viun-Chr5 1715950 1719314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00294 317 457 Calmodulin-binding Proteins AT2G22960 26.241 3.37e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00294 K16297 - gmx:100805130 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00294 5 1715950 1719314 Viun5g00294 5 1715950 1719314 ECH